Hg_chrom2_TN10mRNA_3978
Organism: Heterodera glycines Gene Locus: chr2:9118092-9119992 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.443 | 1.254 | 0.357 | 0.69 | 1.592 | 0.739 | 1.034 | 0.843 | 1.445 | 0.575 | 2.028 | 1.149 | 1.393 | 1.196 | 1.182 | 0.735 | 0.731 | 1.061 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3774
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.750
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.598
|
0.085
|
0.010
|
0.571
|
0.141
|
0.261
|
0.183
|
0.078
|
0.087
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007170
|
1.000
|
1.000
|
Hsc_gene_5034.t2
|
Hsc_gene_5034.t1;Hsc_gene_5034.t2
|
— |
Q9NZN8.1 CCR4-NOT transcription complex subunit 2 [Homo sapiens]
|
KAF7637179.1 NOT2_3_5 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355|GO:0030015
|
GO:0008150_0.942|GO:0005575_0.834|GO:0110165_0.832|GO:0009987_0.775|GO:0065007_0.771|GO:0005622_0.765|GO:0050789_0.759|GO:0005737_0.662|GO:0008152_0.631|GO:0044238_0.582|GO:0043170_0.570|GO:0050794_0.555|GO:0032501_0.539|GO:0006139_0.533|GO:0032502_0.525|GO:0090304_0.521|GO:0016020_0.505
|
IPR007282+131-256+|IPR038635+80-274+|IPR040168+12-257+
|
— |
PF04153+131-256+NOT2/NOT3/NOT5_C-terminal
|
G3DSA:2.30.30.1020:FF:000005+79-269+Regena,_isoform_C
|
PTHR23326+12-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;258-290
|
1.000
|
80-257
|
4c0d_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
32516.740
|
6.235
|
-1.000
|
22.759
|
10.345
|
47.931
|
52.069
|
11.724
|
11.034
|
51.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
972.436
|
760.171
|
877.864
|
898.528
|
1014.466
|
987.483
|
1557.555
|
1292.794
|
535.289
|
1082.117
|
847.762
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.142
|
0.143
|
— |
0.668
|
0.281
|
0.413
|
— | — | — | — | — |
No JSON data available for plots.