Hg_chrom2_TN10mRNA_3979
Organism: Heterodera glycines Gene Locus: chr2:9122165-9123637 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 0.731 | 1.618 | 0.181 | 2.531 | 1.342 | 0.499 | 0.785 | 0.931 | 0.708 | 1.428 | 1.848 | 1.018 | 0.805 | 1.282 | 0.748 | 1.116 | 0.555 | 0.805 | 0.924 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3775
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.853
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKPRKKTKKAI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.979
|
0.106
|
0.003
|
0.295
|
0.083
|
0.055
|
0.080
|
0.006
|
0.011
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003410
|
1.000
|
2.000
|
Hsc_gene_5035.t1;Hsc_gene_5038.t1
|
Hsc_gene_5035.t1;Hsc_gene_5038.t1;Hsc_gene_5040.t1
|
— | — |
KAI1715316.1 HPC2 and ubinuclein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.896|GO:0110165_0.887|GO:0008150_0.767|GO:0005622_0.724|GO:0009987_0.718|GO:0016020_0.656|GO:0043226_0.656|GO:0043229_0.637|GO:0043227_0.605|GO:0043231_0.580|GO:0005634_0.565
|
IPR014840+102-147+
|
— |
PF08729+102-147+HPC2_and_ubinuclein_domain
|
— |
PTHR21669+12-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-191
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
22409.700
|
4.440
|
-14.500
|
41.361
|
9.424
|
61.780
|
38.220
|
17.277
|
24.084
|
41.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightcyan
|
534.286
|
189.666
|
305.120
|
323.060
|
486.571
|
413.545
|
1264.543
|
397.068
|
705.459
|
541.069
|
611.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.457
|
0.631
|
0.190
|
0.559
|
-0.220
|
1.625
|
— |
1.817
|
— | — | — | — | — |
No JSON data available for plots.