Hg_chrom2_TN10mRNA_3981
Organism: Heterodera glycines Gene Locus: chr2:9125577-9127436 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.329 | 1.196 | 0.26 | 1.281 | 0.333 | 0.513 | 0.748 | 1.286 | 0.698 | 2.201 | 0.606 | 1.849 | 1.429 | 0.604 | 0.933 | 1.306 | 1.218 | 0.779 | 0.879 | 0.924 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3777
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
2-22
|
0.998
|
75-115
|
1.000
|
— | — |
0.000
|
— | — |
0.071
|
0.949
|
0.039
|
0.092
|
0.067
|
0.046
|
0.054
|
0.033
|
0.082
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007172
|
1.000
|
1.000
|
Hsc_gene_5042.t1
|
Hsc_gene_5042.t1
|
— |
Q12887.3 Protoheme IX farnesyltransferase, mitochondrial [Homo sapiens]
|
KAH7729491.1 protoheme IX farnesyltransferase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006783|GO:0008495|GO:0016020|GO:0016765
|
GO:0008150_0.845|GO:0005575_0.799|GO:0110165_0.799|GO:0016020_0.708|GO:0008152_0.610|GO:0005622_0.587|GO:0009058_0.580|GO:0043226_0.554|GO:0005737_0.552|GO:0043227_0.549|GO:0043229_0.544|GO:0043231_0.544|GO:0009987_0.520
|
IPR000537+62-305+|IPR006369+21-334_41-322_44-318_46-316+|IPR044878+49-203+
|
— |
PF01040+62-305+UbiA_prenyltransferase_family
|
G3DSA:1.10.357.140:FF:000006+48-204+Protoheme_IX_farnesyltransferase,_mitochondrial
|
PTHR43448+21-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
38009.690
|
9.764
|
22.500
|
14.571
|
12.000
|
38.286
|
61.714
|
11.143
|
3.429
|
52.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
salmon
|
752.760
|
506.319
|
477.256
|
596.165
|
800.895
|
608.250
|
832.755
|
464.259
|
765.299
|
1112.137
|
963.492
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.315
|
— |
0.430
|
0.394
|
-0.382
|
0.463
|
-0.497
|
0.986
|
— | — | — | — | — |
No JSON data available for plots.