Hg_chrom2_TN10mRNA_3982
Organism: Heterodera glycines Gene Locus: chr2:9127727-9133073 Feature type: polypeptideProtein Sequence
Length: 1,107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 0.882 | 1.281 | 0.685 | 1.46 | 1.297 | 0.344 | 1.536 | 1.465 | 1.709 | 0.794 | 1.169 | 1.255 | 0.695 | 1.069 | 1.019 | 0.8 | 0.958 | 0.973 | 0.638 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK,RKERRTRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.606
|
0.097
|
0.015
|
0.611
|
0.156
|
0.197
|
0.250
|
0.038
|
0.111
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007173
|
1.000
|
1.000
|
Hsc_gene_5043.t1
|
Hsc_gene_5043.t1
|
— |
Q9EPL8.2 Importin-7 [Mus musculus]
|
KAF7637161.1 Importin N-terminal domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0031267
|
GO:0005575_0.932|GO:0110165_0.925|GO:0005622_0.867|GO:0008150_0.854|GO:0016020_0.850|GO:0009987_0.816|GO:0043226_0.797|GO:0043229_0.765|GO:0043227_0.750|GO:0043231_0.706|GO:0065007_0.682|GO:0003674_0.677|GO:0050789_0.664|GO:0005737_0.662|GO:0050794_0.634|GO:0005488_0.620|GO:0005634_0.619|GO:0005515_0.535
|
IPR001494+22-97_23-96+|IPR011989+1-986+|IPR016024+2-950+
|
SM00913+22-97+
|
PF03810+23-96+Importin-beta_N-terminal_domain
|
— |
PTHR10997+4-1035+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
913-1037
|
2.000
|
1-912;1038-1107
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
127320.370
|
4.785
|
-42.000
|
29.359
|
11.021
|
50.226
|
49.774
|
13.550
|
15.808
|
43.451
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
4438.530
|
3658.180
|
3607.428
|
4354.927
|
5032.111
|
4525.726
|
3740.255
|
3180.164
|
7487.446
|
3265.938
|
5075.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.249
|
0.115
|
0.380
|
0.177
|
-0.138
|
-0.265
|
-0.614
|
0.376
|
— | — | — | — | — |
No JSON data available for plots.