Hg_chrom2_TN10mRNA_3985
Organism: Heterodera glycines Gene Locus: chr2:9147113-9149395 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 0.573 | 0.768 | 1.093 | 0.469 | 0.993 | 0.587 | 1.585 | 1.252 | 2.189 | 0.694 | 1.864 | 2.152 | 0.745 | 0.862 | 1.258 | 0.52 | 0.907 | 1.896 | 1.139 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3781
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
8-30
|
0.974
|
— | — | — | — |
0.000
|
— | — |
0.059
|
0.033
|
0.012
|
0.172
|
0.288
|
0.494
|
0.376
|
0.002
|
0.734
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001865
|
2.000
|
2.000
|
Hsc_gene_5046.t1;Hsc_gene_6784.t1
|
Hsc_gene_5046.t1
|
— | — |
XP_024499230.1 BcDNA.LD19727 [Strongyloides ratti];CEF60020.1 BcDNA.LD19727 [Strongyloides ratti]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.928|GO:0110165_0.928|GO:0008150_0.813|GO:0005886_0.797|GO:0016020_0.797|GO:0071944_0.797|GO:0009987_0.768|GO:0065007_0.577|GO:0050789_0.556|GO:0051179_0.553|GO:0003674_0.539|GO:0005622_0.525|GO:0005737_0.523
|
IPR000301+8-272+|IPR008952+126-235_130-195+|IPR018499+15-262_20-253+
|
— |
PF00335+15-262+Tetraspanin_family
|
— |
PTHR19282+20-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
32652.560
|
8.396
|
9.500
|
19.014
|
17.254
|
37.324
|
62.676
|
11.972
|
7.042
|
42.254
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
679.284
|
526.468
|
408.084
|
334.211
|
469.630
|
528.458
|
417.107
|
464.951
|
224.614
|
1622.565
|
1023.443
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.598
|
-0.792
|
-0.178
|
0.459
|
— |
-0.332
|
-0.292
|
— | — | — | — | — | — |
No JSON data available for plots.