SCN Proteipedia

Hg_chrom2_TN10mRNA_3987

Organism: Heterodera glycines Gene Locus: chr2:9173024-9174542 Feature type: polypeptide

Protein Sequence

Length: 261

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.936	0.535	0.557	0.793	2.299	1.67	1.14	1.916	1.277	1.191	0.581	1.127	0.745	0.663	1.251	1.04	0.628	0.987	0.295	0.0	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3783	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Not_Clustered	0.800

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.409	0.270	0.044	0.524	0.276	0.162	0.310	0.039	0.174	0.139

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003411	2.000	1.000	Hsc_gene_5050.t1	Hsc_gene_5050.t1	—	—	KAI1707900.1 angiomotin [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.948\|GO:0110165_0.948\|GO:0008150_0.940\|GO:0009987_0.880\|GO:0071944_0.861\|GO:0016020_0.860\|GO:0005622_0.847\|GO:0005886_0.846\|GO:0065007_0.843\|GO:0050789_0.830\|GO:0050794_0.806\|GO:0005737_0.798\|GO:0043226_0.784\|GO:0043229_0.760\|GO:0048518_0.737\|GO:0043227_0.731\|GO:0048522_0.723\|GO:0043231_0.710\|GO:0048870_0.680\|GO:0016477_0.677\|GO:0040011_0.675\|GO:0030334_0.674\|GO:0030335_0.674\|GO:0040012_0.674\|GO:0040017_0.674\|GO:2000145_0.674\|GO:2000147_0.674\|GO:0010594_0.670\|GO:0010595_0.670\|GO:0043534_0.670\|GO:0043535_0.670\|GO:0043536_0.670\|GO:0043542_0.670\|GO:0030054_0.642\|GO:0031982_0.624\|GO:0098590_0.608\|GO:0042995_0.601\|GO:0120025_0.595\|GO:0097708_0.579\|GO:0031410_0.577\|GO:0005911_0.555\|GO:0070161_0.555\|GO:0005923_0.540\|GO:0030027_0.540\|GO:0031252_0.540\|GO:0043296_0.540\|GO:0070160_0.540\|GO:0003674_0.498\|GO:0005488_0.474\|GO:0005515_0.474\|GO:0050896_0.467\|GO:0032501_0.441\|GO:0051716_0.420\|GO:0071840_0.419\|GO:0032502_0.418\|GO:0048856_0.418\|GO:0016043_0.413\|GO:0007154_0.397\|GO:0007275_0.397\|GO:0023052_0.395\|GO:0048519_0.389\|GO:0008152_0.387\|GO:0048731_0.385\|GO:0007165_0.377\|GO:0043170_0.375\|GO:0009058_0.374\|GO:0044237_0.374\|GO:0044238_0.373\|GO:0048523_0.373\|GO:0065008_0.371\|GO:0019222_0.370\|GO:0044249_0.368\|GO:0031323_0.367\|GO:0009059_0.366\|GO:0010467_0.366\|GO:0051239_0.364\|GO:0060255_0.363\|GO:0080090_0.363\|GO:0006996_0.362\|GO:0003008_0.354\|GO:0006139_0.354\|GO:0009889_0.353\|GO:0010556_0.353\|GO:0031326_0.353\|GO:0044085_0.352	IPR051747+8-121+	—	—	—	PTHR14826+8-121+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	75-219	2.000	1-74;220-261	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.758	28536.970	4.715	-13.000	30.651	6.897	50.575	49.425	13.793	16.858	46.360

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	228.010	196.503	155.922	197.724	236.986	260.841	286.672	355.810	67.615	312.910	207.784

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.563	—	0.452	0.229	—	—	0.344	—	—	—	—	—	—

No JSON data available for plots.

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