Hg_chrom2_TN10mRNA_3988
Organism: Heterodera glycines Gene Locus: chr2:9174708-9175949 Feature type: polypeptideProtein Sequence
Length: 244
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 0.762 | 0.671 | 0.424 | 1.434 | 0.946 | 1.073 | 0.615 | 1.639 | 1.108 | 0.621 | 1.688 | 2.049 | 1.182 | 1.004 | 1.347 | 0.605 | 0.869 | 0.631 | 0.844 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3784
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
HSP6|AF273733.2#X12jg5718.t1
|
HSP6|AF2737332#X12jg5718t1
|
— |
Hsc_gene_5049
|
— |
26-Not_Clustered
|
0.729
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
transmembrane_domain
|
mitochondrion|endoplasmic_reticulum
|
— | — | — | — | — | — |
1-22
|
0.848
|
1.000
|
0.000
|
0.000
|
0.144
|
0.649
|
0.504
|
0.102
|
0.776
|
0.126
|
0.193
|
0.075
|
0.076
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007176
|
1.000
|
1.000
|
Hsc_gene_5049.t1
|
Hsc_gene_5049.t1
|
— |
Q9BN19.1 Putative esophageal gland cell secretory protein 6 [Heterodera glycines]
|
AVA09701.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.789|GO:0110165_0.789|GO:0008150_0.732|GO:0005622_0.699|GO:0016020_0.697|GO:0005737_0.670|GO:0071944_0.623|GO:0005886_0.596|GO:0043226_0.589|GO:0043227_0.574|GO:0043229_0.573|GO:0043231_0.548|GO:0009987_0.527
|
IPR011893+83-220+|IPR019389+44-224+|IPR036249+80-224+
|
— |
PF10262+83-220+Rdx_family
|
— |
PTHR13544+44-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-244
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
27097.910
|
4.747
|
-6.500
|
22.541
|
12.295
|
42.623
|
57.377
|
10.246
|
12.295
|
47.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1361.532
|
1109.834
|
885.970
|
1232.581
|
1918.303
|
1868.987
|
1554.014
|
1350.836
|
707.180
|
1706.122
|
1278.004
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.554
|
— |
0.585
|
0.606
|
— |
-0.258
|
-0.573
|
0.343
|
— | — | — | — | — |