Hg_chrom2_TN10mRNA_3989
Organism: Heterodera glycines Gene Locus: chr2:9176747-9181010 Feature type: polypeptideProtein Sequence
Length: 1,014
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 1.147 | 0.735 | 0.374 | 1.43 | 2.68 | 0.904 | 1.627 | 0.789 | 1.159 | 0.628 | 1.798 | 0.493 | 0.853 | 1.53 | 1.451 | 0.55 | 0.657 | 0.152 | 0.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3785
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRLIRDHSIDARRERA,RKKSERLEELERACKRIER
|
48-88
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.290
|
0.134
|
0.013
|
0.739
|
0.121
|
0.168
|
0.195
|
0.078
|
0.278
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003411
|
2.000
|
1.000
|
Hsc_gene_5050.t1
|
Hsc_gene_5050.t1
|
— | — |
KAI1707900.1 angiomotin [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.968|GO:0005575_0.947|GO:0110165_0.943|GO:0009987_0.937|GO:0005622_0.916|GO:0065007_0.812|GO:0050789_0.805|GO:0050794_0.786|GO:0043226_0.774|GO:0043229_0.749|GO:0048518_0.707|GO:0016020_0.673|GO:0005737_0.669|GO:0048522_0.598|GO:0043227_0.597|GO:0043231_0.570|GO:0071944_0.540|GO:0005886_0.526|GO:0032502_0.502|GO:0048856_0.502
|
IPR051747+35-462+
|
— | — | — |
PTHR14826+35-462+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-244;617-1014
|
1.000
|
245-616
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
112559.010
|
6.847
|
6.500
|
27.515
|
6.706
|
56.410
|
43.590
|
14.892
|
12.623
|
47.436
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1825.747
|
4377.890
|
1960.550
|
1893.042
|
1864.237
|
1792.119
|
1580.745
|
2457.956
|
1167.668
|
1139.440
|
1151.538
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.389
|
-1.347
|
— | — | — |
-0.171
|
0.351
|
-0.494
|
— | — | — | — | — |
No JSON data available for plots.