Hg_chrom2_TN10mRNA_3990
Organism: Heterodera glycines Gene Locus: chr2:9181094-9187509 Feature type: polypeptideProtein Sequence
Length: 1,540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.748 | 0.936 | 1.027 | 0.649 | 1.093 | 0.916 | 0.843 | 1.461 | 0.765 | 1.272 | 0.659 | 1.07 | 1.497 | 1.086 | 1.232 | 1.67 | 0.724 | 1.023 | 1.548 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3786
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KGREKVRVERKRIVVRRKKLKNNGRRRRDREEEKGELKGKRRKPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.543
|
0.211
|
0.021
|
0.561
|
0.199
|
0.245
|
0.288
|
0.098
|
0.112
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003412
|
1.000
|
2.000
|
Hsc_gene_5051.t1;Hsc_gene_5051.t2
|
Hsc_gene_5051.t1;Hsc_gene_5051.t2
|
— | — |
KAI1708219.1 tectonin beta-propeller repeat-containing protein 2 [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.970|GO:0009987_0.932|GO:0005575_0.929|GO:0110165_0.928|GO:0005622_0.866|GO:0051179_0.758|GO:0051234_0.741|GO:0006810_0.739|GO:0051641_0.703|GO:0005737_0.701|GO:0008104_0.690|GO:0033036_0.690|GO:0070727_0.690|GO:0051649_0.687|GO:0071705_0.686|GO:0045184_0.681|GO:0046907_0.680|GO:0015031_0.679|GO:0006886_0.675|GO:0032527_0.670
|
IPR015943+59-282+|IPR036322+74-283+
|
— | — | — |
PTHR23287+58-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
518-785
|
2.000
|
1-517;786-1540
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
170383.800
|
6.312
|
-5.500
|
25.519
|
11.234
|
49.221
|
50.779
|
13.312
|
12.208
|
53.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
2761.950
|
2621.997
|
1761.812
|
1693.420
|
1803.937
|
2328.420
|
4268.815
|
1864.862
|
819.141
|
5340.453
|
3402.748
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.803
|
-0.768
|
— | — |
0.383
|
0.885
|
-0.426
|
1.338
|
-2.826
|
— | — | — | — |
No JSON data available for plots.