Hg_chrom2_TN10mRNA_3992
Organism: Heterodera glycines Gene Locus: chr2:9189562-9193360 Feature type: polypeptideProtein Sequence
Length: 748
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 0.933 | 0.778 | 1.291 | 1.181 | 1.097 | 1.003 | 1.07 | 0.98 | 0.705 | 0.668 | 1.494 | 1.597 | 1.465 | 1.364 | 1.375 | 0.92 | 0.668 | 1.44 | 0.433 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3788
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRRHCPSAVSCQREEKR,KRKIAKEPFYKRWDRRRPI,RRPINYEMSENVPEKTRQK,EAKANAKLKRRRRQKRKIAKEPFYKRWDRRR
|
— | — | — | — | — |
0.752
|
0.423
|
0.000
|
— |
0.252
|
0.143
|
0.040
|
0.121
|
0.113
|
0.047
|
0.175
|
0.043
|
0.153
|
0.878
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007177
|
1.000
|
1.000
|
Hsc_gene_5055.t1
|
Hsc_gene_5056.t1
|
— |
Q20942.3 Zinc metalloproteinase nas-38 [Caenorhabditis elegans]
|
KHN70991.1 Zinc metalloproteinase nas-38 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0018996
|
GO:0008150_0.807|GO:0005575_0.681|GO:0110165_0.680|GO:0003674_0.625|GO:0032501_0.622|GO:0032502_0.557|GO:0048856_0.546|GO:0009987_0.526
|
IPR000859+364-477_364-480_364-481+|IPR000884+615-663_618-663+|IPR001506+123-322_134-322_156-174_209-227_228-245_267-282_307-320+|IPR006026+130-272+|IPR017050+7-695+|IPR024079+70-323+|IPR034035+138-319+|IPR035914+356-480_363-478+|IPR036383+602-667+
|
SM00042+364-481+|SM00209+618-663+|SM00235+130-272+
|
PF00431+364-477+CUB_domain|PF01400+134-322+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+78-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
475-608;720-748
|
2.000
|
1-474;609-719
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
82888.310
|
7.090
|
6.000
|
24.599
|
11.230
|
48.128
|
51.872
|
13.235
|
11.364
|
54.144
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
purple
|
576.681
|
320.999
|
436.276
|
820.649
|
952.567
|
1544.803
|
721.743
|
906.904
|
51.084
|
345.689
|
219.430
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.213
|
1.217
|
1.020
|
0.182
|
0.713
|
-1.087
|
-0.870
|
— | — |
4.199
|
3.272
|
— | — |