Hg_chrom2_TN10mRNA_3998
Organism: Heterodera glycines Gene Locus: chr2:9207410-9211784 Feature type: polypeptideProtein Sequence
Length: 733
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.952 | 0.698 | 0.868 | 0.141 | 1.569 | 1.189 | 0.585 | 0.887 | 1.182 | 0.848 | 1.364 | 1.445 | 1.251 | 1.207 | 1.643 | 1.091 | 1.029 | 0.641 | 0.525 | 0.642 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3793
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRAR,RKRKH,KTRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.874
|
0.057
|
0.017
|
0.248
|
0.033
|
0.029
|
0.025
|
0.008
|
0.053
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001866
|
1.000
|
3.000
|
Hsc_gene_5061.t1;Hsc_gene_5061.t2;Hsc_gene_5061.t3
|
Hsc_gene_5061.t2
|
— |
Q8R3B7.2 Bromodomain-containing protein 8 [Mus musculus]
|
KAF7636346.1 Bromo domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.830|GO:0005575_0.821|GO:0110165_0.817|GO:0009987_0.787|GO:0005622_0.777|GO:0016020_0.747|GO:0043226_0.738|GO:0043229_0.727|GO:0043227_0.677|GO:0043231_0.649|GO:0003674_0.607|GO:0005634_0.566|GO:0005488_0.543|GO:0065007_0.528|GO:0008152_0.524|GO:0009058_0.524|GO:0044238_0.520|GO:0043170_0.514|GO:0044237_0.511|GO:0050789_0.510|GO:0009059_0.504|GO:0044249_0.504|GO:0050794_0.501
|
IPR001487+525-633_537-617_544-614+|IPR036427+508-634_510-629+
|
SM00297+525-633+
|
PF00439+537-617+Bromodomain
|
— |
PTHR15398+341-716+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
267-486;679-733
|
2.000
|
1-266;487-678
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
83353.630
|
10.028
|
27.500
|
33.015
|
9.141
|
54.570
|
45.430
|
18.827
|
14.188
|
45.703
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
956.639
|
1457.865
|
1060.553
|
938.339
|
938.645
|
868.740
|
1228.322
|
777.860
|
869.250
|
806.988
|
833.672
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.689
|
-0.773
|
— | — | — |
0.509
|
— |
0.800
|
— | — | — | — | — |
No JSON data available for plots.