Hg_chrom2_TN10mRNA_3999
Organism: Heterodera glycines Gene Locus: chr2:9212271-9213646 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.987 | 1.097 | 1.372 | 0.0 | 1.73 | 0.726 | 0.786 | 0.0 | 1.677 | 1.275 | 1.144 | 0.555 | 1.048 | 0.726 | 1.348 | 0.404 | 1.237 | 1.286 | 0.0 | 0.277 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KKKKESIVDLSRFIDKKVR,KKKESIVDLSRFIDKKVRV,KKESIVDLSRFIDKKVRVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.731
|
0.079
|
0.043
|
0.491
|
0.128
|
0.239
|
0.101
|
0.003
|
0.028
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007180
|
1.000
|
1.000
|
Hsc_gene_5062.t1
|
Hsc_gene_5062.t1
|
— |
Q9SI54.1 Sm-like protein LSM7 [Arabidopsis thaliana]
|
KAI1725046.1 LSM domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0000956|GO:0003723
|
GO:0005575_0.899|GO:0110165_0.889|GO:0008150_0.800|GO:0005622_0.798|GO:0043226_0.737|GO:0043229_0.723|GO:0009987_0.718|GO:0016020_0.718|GO:0005737_0.666|GO:0043227_0.622|GO:0043231_0.614|GO:0032991_0.594|GO:0008152_0.519|GO:0009058_0.508|GO:0044237_0.507|GO:0043170_0.503|GO:0044238_0.503
|
IPR001163+15-88_16-87+|IPR010920+17-91+|IPR017132+11-99+|IPR044641+9-99+|IPR047575+12-92+
|
SM00651+15-88+
|
PF01423+16-87+LSM_domain
|
G3DSA:2.30.30.100:FF:000025+2-97+U6_snRNA-associated_Sm-like_protein_LSm7
|
PTHR10553+9-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-106
|
8rm5_67
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
11742.360
|
4.609
|
-4.000
|
32.075
|
4.717
|
50.000
|
50.000
|
14.151
|
17.925
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
975.586
|
334.849
|
477.045
|
815.745
|
871.136
|
807.530
|
597.014
|
557.639
|
1663.058
|
1348.038
|
1483.046
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.281
|
1.148
|
0.883
|
— | — |
-0.427
|
-0.638
|
0.239
|
— | — | — | — | — |
No JSON data available for plots.