SCN Proteipedia

Hg_chrom2_TN10mRNA_4000

Organism: Heterodera glycines Gene Locus: chr2:9215080-9222653 Feature type: polypeptide

Protein Sequence

Length: 1,410

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.891	0.841	0.903	0.538	1.076	0.855	0.903	1.17	1.418	1.16	0.892	1.418	1.123	0.668	1.332	1.206	0.988	1.128	0.709	0.688	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3795	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Not_Clustered	0.921

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRKR,HRRHHYQKRRPK	—	—	—	—	—	—	0.000	—	—	0.085	0.137	0.023	0.246	0.334	0.472	0.452	0.015	0.672	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007181	1.000	1.000	Hsc_gene_5063.t1	Hsc_gene_5063.t1	—	G5EFR6.1 Plasma membrane calcium-transporting ATPase mca-1 [Caenorhabditis elegans]	KAI1700598.1 e1-E2 ATPase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005388\|GO:0005524\|GO:0016020\|GO:0016887\|GO:0070588	GO:0008150_0.949\|GO:0005575_0.918\|GO:0110165_0.914\|GO:0016020_0.868\|GO:0009987_0.817\|GO:0071944_0.797\|GO:0005886_0.776\|GO:0003674_0.742\|GO:0043226_0.644\|GO:0051179_0.636\|GO:0006810_0.624\|GO:0051234_0.624\|GO:0005622_0.611\|GO:0032501_0.581\|GO:0065007_0.535\|GO:0006811_0.526\|GO:0043229_0.526\|GO:0043227_0.521\|GO:0006812_0.511\|GO:0030001_0.511\|GO:0050789_0.506	IPR001757+252-378_485-573_856-970+\|IPR004014+88-162_90-157+\|IPR006068+975-1155+\|IPR006408+432-1158+\|IPR008250+286-383+\|IPR018303+548-554+\|IPR023214+543-935+\|IPR023298+86-1159+\|IPR023299+552-785_556-780+\|IPR036412+544-994+\|IPR044492+528-942+	SM00831+88-162+	PF00122+286-386+E1-E2_ATPase\|PF00689+975-1155+Cation_transporting_ATPase,_C-terminus\|PF00690+90-157+Cation_transporter/ATPase,_N-terminus\|PF00702+770-904+haloacid_dehalogenase-like_hydrolase\|PF13246+599-694+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000001+907-1158+Calcium-transporting_ATPase\|G3DSA:2.70.150.10:FF:000001+259-385+Calcium-transporting_ATPase\|G3DSA:3.40.50.1000:FF:000144+775-820+copper-transporting_ATPase_1_isoform_X2	PTHR24093+50-1157+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-66;1266-1410	1.000	67-1265	6a69_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.780	155904.350	8.572	30.500	26.170	9.645	47.589	52.411	14.752	11.418	50.780

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	turquoise	3951.509	5308.904	3767.464	2073.698	2259.488	3861.419	7282.700	17776.630	422.793	1096.895	807.994

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.724	-1.493	-0.753	0.091	0.788	0.926	2.082	-1.139	—	—	—	—	—

No JSON data available for plots.

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