Hg_chrom2_TN10mRNA_4005
Organism: Heterodera glycines Gene Locus: chr2:9240679-9246314 Feature type: polypeptideProtein Sequence
Length: 922
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 0.883 | 0.907 | 0.561 | 1.247 | 1.251 | 0.607 | 1.681 | 0.916 | 1.568 | 0.953 | 1.212 | 1.567 | 0.521 | 1.217 | 1.24 | 0.676 | 0.97 | 0.751 | 0.638 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3800
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRLPEQFDLGFWKKYRS,KRTLRKMSEEEEDKRKKLI
|
— | — |
61-88
|
0.998
|
— | — |
0.000
|
— | — |
0.509
|
0.151
|
0.012
|
0.450
|
0.129
|
0.398
|
0.221
|
0.013
|
0.110
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003416
|
2.000
|
1.000
|
Hsc_gene_5066.t1
|
Hsc_gene_5066.t1
|
— |
F1QNV4.1 Nuclear pore complex protein Nup133 [Danio rerio]
|
KAF7640045.1 Nucleoporin_N domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0017056
|
GO:0005575_0.922|GO:0110165_0.921|GO:0005622_0.853|GO:0016020_0.851|GO:0043226_0.802|GO:0043229_0.783|GO:0005737_0.777|GO:0071944_0.772|GO:0005886_0.764|GO:0043227_0.756|GO:0043231_0.725|GO:0008150_0.670|GO:0032991_0.651|GO:0005773_0.627|GO:0009987_0.624|GO:0012505_0.622|GO:0005634_0.609|GO:0140513_0.559|GO:0031967_0.557|GO:0005635_0.550|GO:0005643_0.540
|
IPR007187+770-917+|IPR015943+3-407+|IPR037624+8-918+
|
— |
PF03177+770-917+Non-repetitive/WGA-negative_nucleoporin_C-terminal
|
— |
PTHR13405+8-918+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-922
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
104323.100
|
7.391
|
13.500
|
28.091
|
12.148
|
49.566
|
50.434
|
15.618
|
12.473
|
45.445
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
2430.540
|
5462.536
|
2237.279
|
2352.612
|
2502.478
|
1948.724
|
2612.747
|
2431.510
|
1500.406
|
2177.852
|
1887.518
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.518
|
-1.353
|
0.182
|
— |
-0.346
|
0.434
|
— |
0.246
|
— | — | — | — | — |
No JSON data available for plots.