Hg_chrom2_TN10mRNA_4006
Organism: Heterodera glycines Gene Locus: chr2:9246543-9247510 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.45 | 1.413 | 1.507 | 0.953 | 0.737 | 1.558 | 0.592 | 0.829 | 1.105 | 1.493 | 1.005 | 1.625 | 1.074 | 1.169 | 1.24 | 0.631 | 0.996 | 0.753 | 1.275 | 0.975 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3801
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.891
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.544
|
0.154
|
0.012
|
0.668
|
0.299
|
0.321
|
0.367
|
0.037
|
0.116
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007182
|
1.000
|
1.000
|
Hsc_gene_5067.t1
|
Hsc_gene_5067.t1
|
— |
Q9XVK5.1 NEDD8-conjugating enzyme ubc-12 [Caenorhabditis elegans]
|
KAF7637187.1 UBIQUITIN_CONJUGAT_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.887|GO:0003674_0.733|GO:0008152_0.682|GO:0044238_0.670|GO:0043170_0.656|GO:0019538_0.621|GO:0003824_0.610|GO:0016740_0.575|GO:0005575_0.573|GO:0110165_0.572|GO:0140096_0.567|GO:0016746_0.551|GO:0016755_0.546|GO:0019787_0.546|GO:0005622_0.503
|
IPR000608+24-179_27-174_34-174+|IPR016135+14-178_17-178+|IPR023313+99-114+|IPR050113+27-175+
|
SM00212+30-179+
|
PF00179+34-174+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000033+13-179+NEDD8-conjugating_enzyme_UBE2F
|
PTHR24067+27-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
3fn1_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
20910.910
|
7.166
|
1.500
|
27.072
|
10.497
|
49.724
|
50.276
|
14.365
|
12.707
|
47.514
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
1007.425
|
738.392
|
480.989
|
777.526
|
947.239
|
1021.605
|
1196.972
|
960.046
|
1150.040
|
1248.917
|
1206.541
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.848
|
— |
0.802
|
0.253
|
— |
0.239
|
— |
0.461
|
— | — | — | — | — |
No JSON data available for plots.