SCN Proteipedia

Hg_chrom2_TN10mRNA_4009

Organism: Heterodera glycines Gene Locus: chr2:9252431-9253922 Feature type: polypeptide

Protein Sequence

Length: 220

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.899	1.268	0.992	0.313	2.121	1.865	0.487	1.136	1.616	1.536	0.964	1.07	0.505	0.787	0.464	0.909	0.522	1.24	0.0	0.401	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3804	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.622

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PPEKRSK	—	—	—	—	—	—	0.000	—	—	0.903	0.059	0.006	0.443	0.033	0.030	0.133	0.009	0.015	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007185	2.000	0.000	0.000	Hsc_gene_5070.t1	—	Q4V8K2.1 Beta-catenin-like protein 1 [Rattus norvegicus]	KAI1729644.1 catenin-beta-like, arm-motif containing nuclear domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.931\|GO:0005575_0.913\|GO:0110165_0.900\|GO:0005622_0.882\|GO:0009987_0.882\|GO:0005737_0.835\|GO:0003674_0.821\|GO:0065007_0.817\|GO:0050789_0.810\|GO:0016020_0.809\|GO:0005488_0.798\|GO:0005515_0.796\|GO:0043226_0.796\|GO:0050794_0.787\|GO:0043229_0.785\|GO:0008152_0.777\|GO:0044237_0.757\|GO:0043227_0.751\|GO:0009058_0.748\|GO:0043170_0.746\|GO:0048518_0.739\|GO:0044249_0.730\|GO:0048522_0.729\|GO:0032501_0.727\|GO:0043231_0.726\|GO:0009059_0.725\|GO:0010467_0.724\|GO:0032502_0.724\|GO:0048856_0.724\|GO:0007275_0.711\|GO:0005829_0.707\|GO:0032991_0.703\|GO:0048731_0.701\|GO:0019899_0.694\|GO:0008219_0.691\|GO:0012501_0.689\|GO:0043067_0.688\|GO:0002376_0.687\|GO:0006915_0.687\|GO:0042981_0.686\|GO:0043068_0.675\|GO:0043065_0.674\|GO:0002200_0.670\|GO:0002377_0.670\|GO:0002440_0.670\|GO:0002520_0.670\|GO:0016445_0.670\|GO:0043228_0.643\|GO:0043232_0.643\|GO:0005634_0.633\|GO:0005856_0.606\|GO:0015630_0.590\|GO:0031974_0.585\|GO:0043233_0.585\|GO:0070013_0.584\|GO:0031981_0.578\|GO:0140513_0.571\|GO:0005815_0.568\|GO:0005654_0.565\|GO:0005814_0.558\|GO:0005813_0.556\|GO:1990904_0.550\|GO:0000974_0.540\|GO:0005681_0.540	IPR011989+60-218+\|IPR013180+39-147_45-212+\|IPR016024+110-172+\|IPR039678+20-212+	SM01156+39-147+	PF08216+45-212+Catenin-beta-like,_Arm-motif_containing_nuclear	G3DSA:1.25.10.10:FF:001136+59-218+Beta-catenin-like_protein_1	PTHR14978+20-212+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-56	1.000	57-220	4mfv_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.924	24450.620	4.226	-18.500	29.091	5.455	51.364	48.636	10.909	18.182	45.455

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	brown	194.185	235.045	296.103	266.189	266.513	236.423	246.993	285.925	199.082	12.803	92.637

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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