Hg_chrom2_TN10mRNA_4011
Organism: Heterodera glycines Gene Locus: chr2:9259215-9263127 Feature type: polypeptideProtein Sequence
Length: 698
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.85 | 1.099 | 0.808 | 0.79 | 0.86 | 1.249 | 0.887 | 0.788 | 1.178 | 1.801 | 0.521 | 1.517 | 1.472 | 1.57 | 1.316 | 1.064 | 0.611 | 0.608 | 0.551 | 0.506 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3806
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKPKAKGTEKPKEERKRNRKGTKKGKGISGSK
|
50-110
|
0.996
|
32-93
|
0.853
|
— | — |
0.000
|
— | — |
0.180
|
0.027
|
0.015
|
0.233
|
0.240
|
0.473
|
0.260
|
0.016
|
0.738
|
0.258
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003415
|
2.000
|
1.000
|
Hsc_gene_5064.t1
|
Hsc_gene_5064.t1
|
— | — |
KAI1704727.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.743|GO:0005575_0.736|GO:0110165_0.727|GO:0009987_0.695|GO:0016020_0.670|GO:0071944_0.609|GO:0005886_0.599
|
IPR001611+203-227_318-376_439-496+|IPR003591+179-198_201-223_227-250_291-314_339-362_363-386_387-410_435-458_459-482_483-506+|IPR032675+113-313_314-554+|IPR050328+97-313+
|
SM00369+179-198_201-223_227-250_291-314_339-362_363-386_387-410_435-458_459-482_483-506+
|
PF00560+203-227+Leucine_Rich_Repeat|PF13855+318-376_439-496+Leucine_rich_repeat
|
— |
PTHR24373+97-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-38
|
1.000
|
39-698
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
77085.960
|
7.668
|
7.500
|
21.060
|
9.312
|
41.834
|
58.166
|
11.461
|
9.599
|
49.570
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
148.491
|
75.704
|
13.029
|
8.816
|
38.083
|
70.787
|
46.529
|
41.829
|
0.000
|
539.106
|
308.061
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.767
|
-3.239
|
— |
2.081
|
0.907
|
-0.595
|
-0.867
|
— |
-9.872
|
— |
-3.579
|
— | — |
No JSON data available for plots.