Hg_chrom2_TN10mRNA_4015
Organism: Heterodera glycines Gene Locus: chr2:9274205-9275592 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.975 | 0.696 | 0.762 | 1.239 | 1.297 | 0.921 | 0.927 | 1.497 | 1.464 | 2.104 | 0.817 | 0.704 | 1.164 | 0.576 | 1.589 | 0.684 | 0.785 | 0.544 | 0.0 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3810
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.547
|
0.186
|
0.094
|
0.469
|
0.211
|
0.177
|
0.243
|
0.017
|
0.116
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007186
|
1.000
|
1.000
|
Hsc_gene_5071.t2
|
Hsc_gene_5071.t1;Hsc_gene_5071.t2
|
— |
P91079.1 Serine palmitoyltransferase 1 [Caenorhabditis elegans]
|
KAI1717073.1 aminotransferase class I and II domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058|GO:0030170
|
GO:0008150_0.817|GO:0005575_0.800|GO:0009987_0.767|GO:0110165_0.716|GO:0005622_0.645|GO:0016020_0.599|GO:0005737_0.588|GO:0043226_0.579|GO:0043229_0.566|GO:0008152_0.544|GO:0044237_0.532|GO:0043227_0.531|GO:0044238_0.528|GO:0009058_0.519|GO:0043231_0.516|GO:0044249_0.505|GO:0071944_0.505
|
IPR004839+1-155+|IPR015421+2-49+|IPR015422+50-125+|IPR015424+4-157+|IPR050087+1-143+
|
— |
PF00155+1-155+Aminotransferase_class_I_and_II
|
— |
PTHR13693+1-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-167
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
18621.650
|
7.975
|
4.500
|
28.144
|
8.982
|
44.311
|
55.689
|
16.168
|
11.976
|
43.114
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
257.661
|
429.634
|
617.863
|
350.198
|
267.905
|
224.161
|
338.067
|
489.491
|
13.049
|
98.488
|
61.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.294
|
-0.432
|
-0.710
|
-0.418
|
— |
0.604
|
1.025
|
-0.391
|
-3.131
|
5.014
|
— | — | — |
No JSON data available for plots.