Hg_chrom2_TN10mRNA_4017
Organism: Heterodera glycines Gene Locus: chr2:9285321-9287644 Feature type: polypeptideProtein Sequence
Length: 275
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.438 | 0.846 | 0.595 | 0.752 | 1.273 | 1.212 | 0.779 | 2.909 | 0.566 | 1.229 | 0.551 | 1.283 | 1.111 | 0.909 | 2.152 | 0.519 | 0.715 | 1.157 | 0.559 | 0.214 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3812
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — |
11-31
|
0.997
|
92-117
|
0.993
|
— | — |
0.000
|
— | — |
0.092
|
0.276
|
0.015
|
0.392
|
0.796
|
0.129
|
0.274
|
0.043
|
0.120
|
0.435
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003417
|
2.000
|
1.000
|
Hsc_gene_4590.t1
|
Hsc_gene_4590.t1
|
K03E6.5a;K03E6.5b
|
Q21190.2 Protein unc-1 [Caenorhabditis elegans]
|
CTP80700.1 BMA-UNC-1, partial [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0016020
|
GO:0005575_0.874|GO:0110165_0.868|GO:0016020_0.781|GO:0008150_0.778|GO:0071944_0.642|GO:0009987_0.634|GO:0005886_0.624|GO:0003674_0.603|GO:0065007_0.559|GO:0005488_0.546|GO:0050789_0.543|GO:0043226_0.505
|
IPR001107+39-201_134-217+|IPR001972+133-150_153-176_177-195_196-217_221-244+|IPR018080+157-185+|IPR036013+120-192_124-208+|IPR043202+123-274+
|
SM00244+39-201+
|
PF01145+134-217+SPFH_domain_/_Band_7_family
|
— |
PTHR10264+123-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7
|
1.000
|
8-275
|
9oh9_P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
30794.180
|
9.965
|
17.000
|
30.909
|
11.273
|
47.273
|
52.727
|
20.000
|
10.909
|
48.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1325.428
|
2518.920
|
4802.537
|
1668.733
|
675.451
|
755.897
|
226.336
|
2343.901
|
504.387
|
548.543
|
529.619
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
-0.731
|
-1.417
|
-1.336
|
— |
-1.728
|
1.531
|
-3.230
|
— | — | — | — | — |
No JSON data available for plots.