SCN Proteipedia

Hg_chrom2_TN10mRNA_4020

Organism: Heterodera glycines Gene Locus: chr2:9291083-9293013 Feature type: polypeptide

Protein Sequence

Length: 371

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.846	1.003	1.078	1.022	1.482	1.106	0.481	1.348	0.599	1.858	1.103	2.22	1.497	0.778	1.32	0.655	0.574	0.858	0.207	0.634	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3814	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	RATKRKV	—	—	—	—	—	—	0.000	—	—	0.475	0.140	0.031	0.586	0.213	0.237	0.320	0.023	0.198	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001867	3.000	1.000	Hsc_gene_5070.t1	Hsc_gene_5070.t1	—	O62703.3 Beta-catenin-like protein 1 [Bos taurus]	KAI1729644.1 catenin-beta-like, arm-motif containing nuclear domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.939\|GO:0005575_0.894\|GO:0110165_0.894\|GO:0009987_0.891\|GO:0003674_0.864\|GO:0005622_0.852\|GO:0065007_0.852\|GO:0050789_0.845\|GO:0050794_0.821\|GO:0005488_0.808\|GO:0008152_0.806\|GO:0016020_0.806\|GO:0032501_0.787\|GO:0043226_0.787\|GO:0005737_0.781\|GO:0005515_0.780\|GO:0044237_0.777\|GO:0009058_0.770\|GO:0043170_0.768\|GO:0043229_0.767\|GO:0032502_0.764\|GO:0048856_0.763\|GO:0048518_0.759\|GO:0044249_0.753\|GO:0048522_0.750\|GO:0007275_0.747\|GO:0043227_0.746\|GO:0009059_0.745\|GO:0010467_0.738\|GO:0048731_0.733\|GO:0043231_0.716\|GO:0008219_0.701\|GO:0012501_0.701\|GO:0043067_0.698\|GO:0006915_0.697\|GO:0042981_0.696\|GO:0002376_0.695\|GO:0019899_0.691\|GO:0043068_0.677\|GO:0043065_0.675\|GO:0032991_0.671\|GO:0002200_0.670\|GO:0002377_0.670\|GO:0002440_0.670\|GO:0002520_0.670\|GO:0016445_0.670\|GO:0005829_0.637\|GO:0043228_0.632\|GO:0043232_0.632\|GO:0005634_0.629\|GO:0031974_0.607\|GO:0043233_0.607\|GO:0070013_0.604\|GO:0031981_0.600\|GO:0005856_0.585\|GO:0005654_0.581\|GO:0015630_0.569\|GO:0140513_0.561\|GO:0005815_0.558\|GO:0005814_0.553\|GO:0005813_0.552\|GO:1990904_0.550\|GO:0000974_0.540\|GO:0005681_0.540	IPR011989+1-368+\|IPR013180+3-329+\|IPR016024+5-264+\|IPR039678+3-361+	—	PF08216+3-329+Catenin-beta-like,_Arm-motif_containing_nuclear	G3DSA:1.25.10.10:FF:001136+2-361+Beta-catenin-like_protein_1	PTHR14978+3-361+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-371	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.571	42684.380	6.649	1.000	31.267	10.512	47.978	52.022	16.442	14.825	42.318

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	midnightblue	411.868	232.961	275.063	280.371	293.080	276.645	232.724	240.029	225.056	946.552	637.339

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	-0.238	-0.311	—	—	—	—	—	—

No JSON data available for plots.

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