Hg_chrom2_TN10mRNA_4021
Organism: Heterodera glycines Gene Locus: chr2:9293276-9303373 Feature type: polypeptideProtein Sequence
Length: 490
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 0.854 | 0.853 | 0.915 | 1.361 | 0.576 | 0.899 | 1.02 | 1.451 | 1.434 | 1.02 | 1.561 | 1.417 | 0.746 | 1.333 | 0.875 | 0.569 | 0.989 | 0.785 | 0.66 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3815
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.821
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
GGKRKKKGKKA,RKMVELEEKDKMNPKRKAS
|
33-54
|
0.814
|
1-22
|
0.991
|
— | — |
0.000
|
— | — |
0.206
|
0.259
|
0.171
|
0.143
|
0.757
|
0.043
|
0.078
|
0.120
|
0.154
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007187
|
1.000
|
1.000
|
Hsc_gene_5073.t1
|
Hsc_gene_5071.t1;Hsc_gene_5071.t2;Hsc_gene_5073.t1
|
— |
P91079.1 Serine palmitoyltransferase 1 [Caenorhabditis elegans]
|
KAF8384137.1 sptl-1 [Pristionchus pacificus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058|GO:0030170
|
GO:0008150_0.849|GO:0005575_0.731|GO:0009987_0.702|GO:0110165_0.683|GO:0005622_0.596|GO:0016020_0.593|GO:0008152_0.571|GO:0003674_0.570|GO:0005737_0.561|GO:0043226_0.536|GO:0009058_0.529|GO:0043229_0.522|GO:0044237_0.511|GO:0043227_0.501
|
IPR004839+112-479+|IPR015421+127-372+|IPR015422+106-446+|IPR015424+80-481+|IPR050087+58-466+
|
— |
PF00155+112-479+Aminotransferase_class_I_and_II
|
G3DSA:3.40.640.10:FF:000049+127-372+serine_palmitoyltransferase_1_isoform_X1
|
PTHR13693+58-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-490
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
54938.680
|
7.726
|
7.000
|
28.163
|
10.408
|
43.673
|
56.327
|
15.306
|
12.857
|
46.122
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1295.639
|
1462.726
|
1129.744
|
865.298
|
903.992
|
929.887
|
1186.995
|
1227.425
|
1261.675
|
1832.390
|
1587.798
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.603
|
-0.895
|
-0.276
|
— | — |
0.363
|
0.294
|
— | — | — | — | — | — |
No JSON data available for plots.