Hg_chrom2_TN10mRNA_4022
Organism: Heterodera glycines Gene Locus: chr2:9298085-9301595 Feature type: polypeptideProtein Sequence
Length: 708
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.314 | 1.104 | 0.487 | 1.177 | 0.761 | 0.656 | 1.059 | 1.067 | 1.031 | 0.899 | 1.662 | 1.569 | 1.086 | 1.412 | 0.827 | 0.718 | 0.984 | 2.173 | 1.163 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3816
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — |
0.570
|
0.451
|
0.000
|
— |
0.082
|
0.098
|
0.017
|
0.124
|
0.315
|
0.343
|
0.315
|
0.194
|
0.731
|
0.371
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007188
|
1.000
|
1.000
|
Hsc_gene_5072.t2
|
Hsc_gene_5072.t1;Hsc_gene_5072.t2
|
— |
A8J4S9.1 Trehalase [Apis mellifera]
|
KAI1730024.1 trehalase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.863|GO:0005575_0.798|GO:0110165_0.794|GO:0003674_0.789|GO:0008152_0.691|GO:0003824_0.658|GO:0016020_0.639|GO:0044238_0.622|GO:0009056_0.605|GO:0016787_0.604|GO:0071944_0.578|GO:0005886_0.575|GO:0004553_0.567|GO:0016798_0.567|GO:0015927_0.563|GO:0005975_0.538|GO:0005984_0.531|GO:0005991_0.531|GO:0005993_0.531|GO:0009311_0.531|GO:0009313_0.531|GO:0016052_0.531|GO:0046352_0.531
|
IPR001661+66-625_101-615_262-280_365-382_399-416_514-530_598-611+|IPR008928+82-619+|IPR012341+77-638+|IPR018232+220-233_521-530+
|
— |
PF01204+101-615+Trehalase
|
— |
PTHR23403+66-625+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-708
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
82137.440
|
7.155
|
5.500
|
28.107
|
14.548
|
46.893
|
53.107
|
14.972
|
13.136
|
47.316
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |