Hg_chrom2_TN10mRNA_4023
Organism: Heterodera glycines Gene Locus: chr2:9303516-9304296 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 1.292 | 0.561 | 0.639 | 1.132 | 2.058 | 0.514 | 0.926 | 1.509 | 1.168 | 0.468 | 0.726 | 2.058 | 1.068 | 1.008 | 1.146 | 0.506 | 1.122 | 1.425 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3817
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.535
|
0.132
|
0.017
|
0.707
|
0.168
|
0.087
|
0.187
|
0.034
|
0.087
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001868
|
3.000
|
1.000
|
Hsc_gene_5074.t1
|
— | — |
P70711.1 Ubiquitin-conjugating enzyme E2 D2B [Rattus norvegicus]
|
KAH7728725.1 ubiquitin-conjugating enzyme E2 E2 [Aphelenchus avenae]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.849|GO:0003674_0.744|GO:0003824_0.628|GO:0016740_0.600|GO:0008152_0.598|GO:0140096_0.592|GO:0044238_0.587|GO:0016746_0.585|GO:0043170_0.584|GO:0016755_0.581|GO:0019787_0.581|GO:0004842_0.580|GO:0019538_0.564|GO:0005575_0.563|GO:0110165_0.547
|
IPR000608+22-162_25-157_33-155+|IPR016135+14-161_17-162+
|
SM00212+25-162+
|
PF00179+33-155+Ubiquitin-conjugating_enzyme
|
— |
PTHR24068+32-147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-162
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
18595.170
|
5.655
|
-1.500
|
19.753
|
14.815
|
44.444
|
55.556
|
9.877
|
9.877
|
45.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
469.150
|
507.667
|
286.517
|
268.399
|
337.260
|
380.384
|
426.635
|
369.567
|
217.513
|
923.234
|
620.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.056
|
-1.057
|
— |
0.298
|
0.188
|
— | — |
0.349
|
— | — | — | — | — |
No JSON data available for plots.