Hg_chrom2_TN10mRNA_4024
Organism: Heterodera glycines Gene Locus: chr2:9303516-9304296 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 1.376 | 0.538 | 0.816 | 1.085 | 2.124 | 0.493 | 0.888 | 1.446 | 1.119 | 0.448 | 0.696 | 1.972 | 1.138 | 0.966 | 1.268 | 0.485 | 1.076 | 1.365 | 1.044 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3817
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.427
|
0.125
|
0.019
|
0.657
|
0.148
|
0.220
|
0.275
|
0.046
|
0.130
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001868
|
3.000
|
1.000
|
Hsc_gene_5074.t1
|
Hsc_gene_5074.t1
|
— |
P70711.1 Ubiquitin-conjugating enzyme E2 D2B [Rattus norvegicus]
|
KAH7728725.1 ubiquitin-conjugating enzyme E2 E2 [Aphelenchus avenae]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.850|GO:0003674_0.746|GO:0003824_0.623|GO:0008152_0.606|GO:0016740_0.598|GO:0140096_0.592|GO:0044238_0.591|GO:0043170_0.587|GO:0016746_0.586|GO:0016755_0.582|GO:0019787_0.582|GO:0004842_0.580|GO:0019538_0.562|GO:0005575_0.558|GO:0110165_0.540
|
IPR000608+22-169_25-164_26-162+|IPR016135+14-168_17-169+|IPR050113+21-166+
|
SM00212+25-169+
|
PF00179+26-162+Ubiquitin-conjugating_enzyme
|
— |
PTHR24067+21-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-169
|
1y6l_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
19282.900
|
5.654
|
-1.500
|
18.935
|
14.201
|
44.970
|
55.030
|
9.467
|
9.467
|
47.337
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
469.150
|
507.667
|
286.517
|
268.399
|
337.260
|
380.384
|
426.635
|
369.567
|
217.513
|
923.234
|
620.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.056
|
-1.057
|
— |
0.298
|
0.188
|
— | — |
0.349
|
— | — | — | — | — |
No JSON data available for plots.