Hg_chrom2_TN10mRNA_4028
Organism: Heterodera glycines Gene Locus: chr2:9307261-9310070 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 1.584 | 0.599 | 0.682 | 1.099 | 1.127 | 0.759 | 0.989 | 0.977 | 1.604 | 0.5 | 1.551 | 1.526 | 1.141 | 1.076 | 1.036 | 0.901 | 0.899 | 1.014 | 0.646 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3820
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.673
|
0.081
|
0.004
|
0.585
|
0.163
|
0.103
|
0.160
|
0.046
|
0.087
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007190
|
1.000
|
1.000
|
Hsc_gene_5076.t1
|
Hsc_gene_5076.t1
|
— |
Q9NZN8.1 CCR4-NOT transcription complex subunit 2 [Homo sapiens]
|
KAF7637179.1 NOT2_3_5 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355|GO:0030014|GO:0030015
|
GO:0008150_0.880|GO:0005575_0.836|GO:0110165_0.833|GO:0005622_0.744|GO:0009987_0.742|GO:0065007_0.702|GO:0050789_0.690|GO:0005737_0.657|GO:0008152_0.581|GO:0044238_0.564|GO:0043170_0.550|GO:0050794_0.549|GO:0006139_0.513|GO:0016020_0.508|GO:0090304_0.503
|
IPR007282+78-200+|IPR019312+320-448+|IPR038635+28-222+|IPR040168+8-203+
|
— |
PF04153+78-200+NOT2/NOT3/NOT5_C-terminal|PF10155+320-448+CCR4-NOT_transcription_complex_subunit_11
|
G3DSA:2.30.30.1020:FF:000005+26-216+Regena,_isoform_C
|
PTHR23326+8-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;199-260
|
2.000
|
25-198;261-455
|
4c0d_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
50698.960
|
6.238
|
-1.500
|
20.440
|
10.989
|
44.396
|
55.604
|
10.549
|
9.890
|
50.549
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
486.483
|
751.591
|
510.214
|
420.647
|
551.049
|
641.083
|
1213.288
|
791.465
|
97.209
|
225.707
|
170.636
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.789
|
-0.975
|
-0.169
|
0.358
|
0.233
|
0.930
|
— |
0.757
|
— | — | — | — | — |
No JSON data available for plots.