Hg_chrom2_TN10mRNA_4029
Organism: Heterodera glycines Gene Locus: chr2:9310759-9315452 Feature type: polypeptideProtein Sequence
Length: 389
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.405 | 0.837 | 0.421 | 0.886 | 0.943 | 2.043 | 0.857 | 2.442 | 0.4 | 0.764 | 0.701 | 1.361 | 1.428 | 1.829 | 1.154 | 1.249 | 0.674 | 0.506 | 0.791 | 0.529 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3821
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
NRRAKWRKRER,RRKGTTAAERKRERG,KRISERRKGTTAAERKRER,KRERGQQPIGVNSCSRQRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.794
|
0.234
|
0.011
|
0.335
|
0.060
|
0.052
|
0.058
|
0.005
|
0.055
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007191
|
1.000
|
1.000
|
Hsc_gene_5077.t1
|
Hsc_gene_5077.t1
|
— |
P52906.2 Homeobox protein unc-30 [Caenorhabditis elegans]
|
ACV72689.1 UNC-30, partial [Caenorhabditis remanei];ACV72690.1 UNC-30, partial [Caenorhabditis remanei];ACV72702.1 UNC-30, partial [Caenorhabditis remanei]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.913|GO:0009987_0.829|GO:0065007_0.796|GO:0050789_0.789|GO:0050794_0.785|GO:0032501_0.768|GO:0032502_0.761|GO:0048856_0.756|GO:0007275_0.752|GO:0008152_0.701|GO:0019222_0.701|GO:0044238_0.701|GO:0080090_0.701|GO:0031323_0.696|GO:0044237_0.696|GO:0043170_0.695|GO:0060255_0.695|GO:0048731_0.693|GO:0006139_0.689|GO:0016070_0.689|GO:0019219_0.689|GO:0051252_0.689|GO:0090304_0.689|GO:0005575_0.686|GO:0009058_0.685|GO:0009059_0.685|GO:0009889_0.685|GO:0010467_0.685|GO:0010468_0.685|GO:0010556_0.685|GO:0031326_0.685|GO:0044249_0.685|GO:0006351_0.684|GO:0032774_0.684|GO:0034654_0.684|GO:0141187_0.684|GO:0006355_0.683|GO:2001141_0.683|GO:0003674_0.682|GO:0003676_0.682|GO:0005488_0.682|GO:0097159_0.682|GO:0048513_0.666|GO:0110165_0.662|GO:0003677_0.660|GO:0003690_0.660|GO:0043565_0.660|GO:1990837_0.660|GO:0005622_0.615|GO:0043226_0.597|GO:0043229_0.588|GO:0030154_0.576|GO:0048869_0.576|GO:0000976_0.569|GO:0001067_0.569|GO:0007399_0.566|GO:0048518_0.524|GO:0016020_0.522|GO:0048522_0.520
|
IPR001356+233-293_235-297_236-292_236-294+|IPR009057+230-297+|IPR017970+268-291+
|
SM00389+235-297+
|
PF00046+236-292+Homeodomain
|
G3DSA:1.10.10.60:FF:000679+237-296+Homeobox_protein_aristaless
|
PTHR45882+187-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-55;171-263
|
2.000
|
56-170;264-389
|
2lkx_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
42535.700
|
8.950
|
18.500
|
23.136
|
12.853
|
47.558
|
52.442
|
15.167
|
7.969
|
53.470
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
142.506
|
634.869
|
283.376
|
179.671
|
58.764
|
24.650
|
40.378
|
111.647
|
8.977
|
116.725
|
70.547
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.393
|
-1.958
|
-0.548
|
-1.642
|
-1.240
|
0.723
|
2.080
|
-1.326
|
— |
4.509
|
— | — | — |
No JSON data available for plots.