Hg_chrom2_TN10mRNA_4030
Organism: Heterodera glycines Gene Locus: chr2:9317915-9321224 Feature type: polypeptideProtein Sequence
Length: 802
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.913 | 1.305 | 0.771 | 0.602 | 0.852 | 1.151 | 1.039 | 1.247 | 0.72 | 2.308 | 0.34 | 1.394 | 0.727 | 1.031 | 1.45 | 1.354 | 0.797 | 0.567 | 0.288 | 0.367 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3822
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KRAR
|
— | — | — | — |
1-19
|
0.985
|
1.000
|
1.000
|
1.000
|
0.153
|
0.032
|
0.017
|
0.283
|
0.265
|
0.466
|
0.353
|
0.072
|
0.786
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007192
|
1.000
|
1.000
|
Hsc_gene_5078.t1
|
Hsc_gene_5078.t1
|
— | — |
KAF7637188.1 LRRCT domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001611+166-187_166-225_190-211_290-349_429-450_453-471+|IPR003591+164-187_188-211_212-237_289-312_313-336_403-426_427-450_451-474+|IPR032675+30-254_255-365_366-540+|IPR050541+6-252+
|
SM00369+164-187_188-211_212-237_289-312_313-336_403-426_427-450_451-474+
|
PF00560+429-450_453-471+Leucine_Rich_Repeat|PF13855+166-225_290-349+Leucine_rich_repeat
|
— |
PTHR24369+6-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
38-92;656-802
|
2.000
|
1-37;93-655
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
86770.110
|
7.505
|
10.000
|
21.197
|
6.733
|
45.636
|
54.364
|
11.845
|
9.352
|
51.621
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
188.863
|
227.007
|
269.666
|
254.024
|
229.454
|
161.897
|
104.329
|
138.359
|
33.472
|
281.898
|
175.430
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.486
|
-0.624
|
— | — | — | — | — | — | — |