Hg_chrom2_TN10mRNA_4032
Organism: Heterodera glycines Gene Locus: chr2:9328886-9333045 Feature type: polypeptideProtein Sequence
Length: 662
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.036 | 1.581 | 0.796 | 0.365 | 1.485 | 1.239 | 1.097 | 1.36 | 0.94 | 0.919 | 0.755 | 1.511 | 0.713 | 0.668 | 1.541 | 0.993 | 1.065 | 0.687 | 1.627 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3824
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRRT
|
54-74
|
0.996
|
35-74
|
0.873
|
— | — |
0.000
|
— | — |
0.285
|
0.301
|
0.043
|
0.478
|
0.141
|
0.142
|
0.290
|
0.087
|
0.490
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007193
|
1.000
|
1.000
|
Hsc_gene_5081.t1
|
Hsc_gene_5081.t1
|
— |
O18334.1 Ras-related protein Rab6 [Drosophila melanogaster]
|
KAI1719122.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.911|GO:0110165_0.911|GO:0005622_0.776|GO:0008150_0.739|GO:0016020_0.722|GO:0043226_0.684|GO:0043229_0.667|GO:0071944_0.666|GO:0005886_0.646|GO:0009987_0.635|GO:0005737_0.623|GO:0043227_0.593|GO:0043231_0.577|GO:0003674_0.554
|
IPR001806+398-654_408-575_409-579+|IPR005225+406-571+|IPR027417+400-592_406-575+
|
SM00173+404-578+|SM00174+409-579+|SM00175+408-578+|SM00176+412-627+
|
PF00071+408-575+Ras_family
|
G3DSA:3.40.50.300:FF:001462+403-597+Small_GTP-binding_protein,_putative
|
PTHR47978+405-584+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-378
|
1.000
|
379-662
|
4phh_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
73251.430
|
6.886
|
4.000
|
28.550
|
8.308
|
53.625
|
46.375
|
15.257
|
13.293
|
51.813
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
545.884
|
989.580
|
219.550
|
86.561
|
103.830
|
211.473
|
796.790
|
161.543
|
38.945
|
1395.535
|
814.139
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.402
|
-3.651
|
-1.233
|
— |
1.039
|
1.924
|
— |
2.441
|
-5.290
|
— | — | — | — |
No JSON data available for plots.