Hg_chrom2_TN10mRNA_4034
Organism: Heterodera glycines Gene Locus: chr2:9343329-9347244 Feature type: polypeptideProtein Sequence
Length: 786
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.45 | 0.648 | 0.658 | 1.272 | 1.109 | 0.742 | 1.463 | 0.905 | 1.582 | 0.733 | 1.123 | 1.767 | 0.881 | 1.428 | 1.2 | 0.834 | 0.636 | 1.272 | 0.187 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3826
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
QKRKK
|
— | — |
51-78
|
0.992
|
1-26
|
0.615
|
0.725
|
1.000
|
1.000
|
0.179
|
0.045
|
0.012
|
0.234
|
0.241
|
0.358
|
0.174
|
0.036
|
0.843
|
0.289
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007195
|
1.000
|
1.000
|
Hsc_gene_5083.t1
|
Hsc_gene_5083.t1;Hsc_gene_5083.t2
|
— | — |
KAI1732277.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.957|GO:0005575_0.775|GO:0110165_0.770|GO:0009987_0.730|GO:0032501_0.697|GO:0003674_0.606|GO:0071944_0.602|GO:0065007_0.594|GO:0050789_0.572|GO:0005488_0.550|GO:0005622_0.547|GO:0050794_0.546|GO:0050896_0.537|GO:0016020_0.531
|
IPR001611+186-251_187-208_290-349_412-477_435-456+|IPR003591+185-208_212-237_238-261_288-311_312-335_336-359_360-383_384-407_409-432_433-456+|IPR032675+56-283_284-405_406-518+|IPR050328+49-276+
|
SM00369+185-208_212-237_238-261_288-311_312-335_336-359_360-383_384-407_409-432_433-456+
|
PF13855+186-251_290-349_412-477+Leucine_rich_repeat
|
— |
PTHR24373+49-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
488-625
|
2.000
|
1-487;626-786
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
88814.010
|
8.141
|
16.500
|
25.954
|
11.578
|
50.000
|
50.000
|
14.758
|
11.196
|
46.947
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
371.760
|
144.821
|
99.309
|
47.962
|
53.481
|
53.139
|
80.828
|
31.835
|
566.448
|
1009.850
|
819.821
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.777
|
-1.731
|
-0.938
|
— | — |
0.616
|
-0.848
|
1.490
|
— |
-3.431
|
-3.965
|
— | — |