SCN Proteipedia

Hg_chrom2_TN10mRNA_4035

Organism: Heterodera glycines Gene Locus: chr2:9348610-9351972 Feature type: polypeptide

Protein Sequence

Length: 522

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.846	1.604	0.836	0.528	0.83	1.474	0.912	0.766	1.064	0.88	0.813	2.028	1.171	1.437	0.938	1.615	0.911	0.61	0.589	0.507	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3827	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.908

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KGGAKRK	17-76	0.881	—	—	—	—	0.000	—	—	0.885	0.099	0.022	0.362	0.037	0.037	0.050	0.049	0.042	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007196	1.000	1.000	Hsc_gene_5084.t1	Hsc_gene_5084.t1	—	Q5M9G0.1 Deoxycytidylate deaminase [Rattus norvegicus]	VVC25529.1 APOBEC/CMP deaminase, zinc-binding,Cytidine and deoxycytidylate deaminase domain,Deoxycytidylate deaminase [Cinara cedri]	No	-0.430

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003824\|GO:0008270\|GO:0016787	GO:0005575_0.863\|GO:0110165_0.853\|GO:0008150_0.842\|GO:0005622_0.803\|GO:0009987_0.794\|GO:0003674_0.744\|GO:0005737_0.686\|GO:0008152_0.679\|GO:0044238_0.668\|GO:0009058_0.666\|GO:0044237_0.666\|GO:0006139_0.654\|GO:0034654_0.643\|GO:0003824_0.576\|GO:0016787_0.571\|GO:0005488_0.529	IPR002125+372-485_372-499+\|IPR003656+1-50_5-43+\|IPR015517+264-521+\|IPR016192+441-474+\|IPR016193+374-507+\|IPR035105+374-500+\|IPR036236+3-51+	SM00614+3-46+	PF00383+372-485+Cytidine_and_deoxycytidylate_deaminase_zinc-binding_region\|PF02892+5-43+BED_zinc_finger	G3DSA:3.40.140.10:FF:000021+363-522+Deoxycytidylate_deaminase	PTHR11086+264-521+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	36-362	2.000	1-35;363-522	2w4l_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.950	56759.680	7.877	6.000	21.073	8.238	50.575	49.425	11.494	9.579	56.322

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	909.323	391.311	240.973	719.410	1487.818	1042.634	2316.647	257.210	454.279	1216.578	889.879

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.930	0.741	1.688	1.016	-0.499	1.163	-2.130	3.316	—	—	—	—	—

No JSON data available for plots.

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