Hg_chrom2_TN10mRNA_4037
Organism: Heterodera glycines Gene Locus: chr2:9356000-9358308 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 1.356 | 1.166 | 0.503 | 1.118 | 0.897 | 0.798 | 2.187 | 1.555 | 0.827 | 0.751 | 2.229 | 1.296 | 0.785 | 1.309 | 0.875 | 0.43 | 1.06 | 1.121 | 1.029 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3829
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.875
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.231
|
0.794
|
0.047
|
0.416
|
0.073
|
0.037
|
0.083
|
0.078
|
0.092
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003418
|
2.000
|
1.000
|
Hsc_gene_5086.t1
|
Hsc_gene_5086.t1
|
— |
O17606.2 MYG1 protein C27H6.8 [Caenorhabditis elegans]
|
KHN81961.1 UPF0160 protein C27H6.8 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.650|GO:0110165_0.643|GO:0005622_0.607|GO:0005737_0.561|GO:0016020_0.559|GO:0043226_0.539|GO:0043229_0.524|GO:0008150_0.508|GO:0043227_0.506
|
IPR003226+16-342_20-340+
|
— |
PF03690+20-340+Uncharacterised_protein_family_(UPF0160)
|
— |
PTHR11215+16-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-343
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
39135.410
|
6.664
|
1.500
|
28.863
|
13.994
|
46.939
|
53.061
|
15.743
|
13.120
|
47.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
paleturquoise
|
1357.771
|
987.134
|
845.047
|
1423.592
|
1588.556
|
1315.184
|
1636.908
|
1031.344
|
1746.222
|
1320.169
|
1502.763
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.455
|
0.391
|
0.862
|
0.126
|
-0.257
|
0.327
|
-0.456
|
0.810
|
— | — | — | — | — |
No JSON data available for plots.