Hg_chrom2_TN10mRNA_4039
Organism: Heterodera glycines Gene Locus: chr2:9360781-9361813 Feature type: polypeptideProtein Sequence
Length: 108
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.431 | 1.292 | 1.01 | 0.319 | 1.389 | 0.475 | 0.551 | 1.852 | 1.646 | 0.876 | 0.982 | 3.813 | 1.286 | 0.178 | 2.079 | 0.794 | 0.911 | 1.403 | 0.712 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3830
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.554
|
0.099
|
0.095
|
0.540
|
0.098
|
0.109
|
0.135
|
0.065
|
0.103
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001157
|
4.000
|
1.000
|
Hsc_gene_12474.t1
|
Hsc_gene_12474.t1
|
— |
Q9HCE1.2 Helicase MOV-10 [Homo sapiens]
|
KAI3413943.1 Helicase MOV-10 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.886|GO:0009987_0.824|GO:0005575_0.783|GO:0110165_0.770|GO:0005622_0.704|GO:0003674_0.646|GO:0008152_0.631|GO:0043170_0.623|GO:0043226_0.617|GO:0043229_0.607|GO:0044238_0.594|GO:0065007_0.583|GO:0050789_0.578|GO:0050794_0.556|GO:0044237_0.551|GO:0005737_0.549|GO:0009058_0.549|GO:0006139_0.546|GO:0044249_0.541|GO:0009059_0.535|GO:0090304_0.534|GO:0016020_0.531|GO:0010467_0.515
|
IPR027417+3-103_5-86+|IPR041679+5-75+|IPR045055+6-94+|IPR047187+5-91+
|
— |
PF13087+5-75+AAA_domain
|
— |
PTHR10887+6-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-108
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
12729.760
|
9.685
|
5.000
|
34.259
|
11.111
|
52.778
|
47.222
|
20.370
|
13.889
|
41.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
71.963
|
39.949
|
49.616
|
67.604
|
133.156
|
100.664
|
124.014
|
96.014
|
17.604
|
72.504
|
48.975
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.621
|
0.558
|
0.948
|
-0.390
|
— | — |
0.514
|
— | — | — | — | — |
No JSON data available for plots.