SCN Proteipedia

Hg_chrom2_TN10mRNA_4041

Organism: Heterodera glycines Gene Locus: chr2:9365335-9368995 Feature type: polypeptide

Protein Sequence

Length: 399

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.903	1.049	0.365	0.605	1.838	2.056	0.716	2.506	0.334	0.881	0.759	2.064	1.184	1.976	1.125	1.217	0.74	0.418	0.578	0.221	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3832	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.890

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	33-53	0.999	—	—	0.000	—	—	0.797	0.096	0.008	0.297	0.071	0.053	0.086	0.066	0.047	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007199	1.000	1.000	Hsc_gene_4596.t1	—	—	Q9IAV3.1 Hematopoietically-expressed homeobox protein hhex [Danio rerio]	KAH7712606.1 PHA-2 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.857\|GO:0009987_0.789\|GO:0065007_0.737\|GO:0050789_0.733\|GO:0050794_0.727\|GO:0032501_0.686\|GO:0032502_0.674\|GO:0048856_0.674\|GO:0007275_0.660\|GO:0048731_0.645\|GO:0005575_0.629\|GO:0110165_0.627\|GO:0008152_0.625\|GO:0019222_0.625\|GO:0031323_0.623\|GO:0044237_0.623\|GO:0043170_0.619\|GO:0060255_0.619\|GO:0044238_0.615\|GO:0080090_0.615\|GO:0003674_0.608\|GO:0005488_0.608\|GO:0009058_0.608\|GO:0009059_0.608\|GO:0009889_0.608\|GO:0010556_0.608\|GO:0031326_0.608\|GO:0044249_0.608\|GO:0010467_0.605\|GO:0005622_0.602\|GO:0006139_0.601\|GO:0016070_0.601\|GO:0019219_0.601\|GO:0051252_0.601\|GO:0090304_0.601\|GO:0032774_0.600\|GO:0034654_0.600\|GO:0141187_0.600\|GO:0010468_0.594\|GO:0043226_0.579\|GO:0006351_0.576\|GO:0006355_0.576\|GO:2001141_0.576\|GO:0043229_0.571\|GO:0003676_0.557\|GO:0097159_0.557\|GO:0048513_0.521\|GO:0030154_0.520\|GO:0048869_0.520\|GO:0003677_0.518\|GO:0016020_0.513\|GO:0048518_0.511\|GO:0043565_0.506\|GO:0048522_0.502	IPR001356+300-360_301-364_303-361_307-359+\|IPR009057+297-362+\|IPR017970+335-358+\|IPR051000+276-377+	SM00389+301-364+	PF00046+307-359+Homeodomain	—	PTHR24324+276-377+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-399	0.000	—	2e1o_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.766	44671.710	6.503	0.000	28.571	10.777	54.135	45.865	15.539	13.033	48.120

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	244.109	359.382	204.999	199.621	67.616	33.977	88.108	75.044	195.308	535.717	389.828

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.038	-0.985	—	-1.592	-0.979	1.389	1.042	—	—	—	-2.785	—	—

No JSON data available for plots.

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