SCN Proteipedia

Hg_chrom2_TN10mRNA_4047

Organism: Heterodera glycines Gene Locus: chr2:9384428-9393634 Feature type: polypeptide

Protein Sequence

Length: 1,883

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.97	0.976	1.091	0.311	1.522	1.77	0.601	0.982	0.956	1.134	1.062	1.468	0.856	1.246	1.279	0.918	0.992	0.603	0.694	0.625	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3837	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.975

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRIR,KRKL,PNSKRAK,KKSKLILAQVLKRQRQ,KRKERRRQQQEGGRRPRKG,EKERKEALRLHIPRKALERPLKKKKSLKSAGKK	—	—	—	—	—	—	0.000	—	—	0.906	0.049	0.038	0.210	0.042	0.027	0.017	0.007	0.129	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003420	2.000	1.000	Hsc_gene_4592.t1	Hsc_gene_4592.t1	—	G5EGM3.1 Transcription initiation factor TFIID subunit 1 [Caenorhabditis elegans]	KAF7637197.1 Bromo domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004402\|GO:0005515\|GO:0005669\|GO:0006366\|GO:0016251\|GO:0017025	GO:0008150_0.934\|GO:0009987_0.884\|GO:0005575_0.824\|GO:0110165_0.822\|GO:0005622_0.792\|GO:0043226_0.741\|GO:0016020_0.738\|GO:0008152_0.727\|GO:0043170_0.727\|GO:0043229_0.718\|GO:0044237_0.701\|GO:0009058_0.700\|GO:0044238_0.700\|GO:0009059_0.692\|GO:0044249_0.692\|GO:0006139_0.676\|GO:0010467_0.676\|GO:0090304_0.669\|GO:0003674_0.667\|GO:0043227_0.667\|GO:0034654_0.660\|GO:0141187_0.658\|GO:0016070_0.647\|GO:0032774_0.641\|GO:0043231_0.633\|GO:0065007_0.619\|GO:0006351_0.614\|GO:0050789_0.607\|GO:0005634_0.589\|GO:0006366_0.580\|GO:0050794_0.580\|GO:0005488_0.545\|GO:0071840_0.505	IPR001487+1518-1626_1530-1611_1537-1607_1554-1570_1570-1588_1588-1607_1640-1748_1652-1733_1659-1729+\|IPR018359+1542-1599+\|IPR022591+450-915+\|IPR036427+1502-1633_1510-1633_1634-1767_1647-1758+\|IPR040240+20-1757+\|IPR041670+1281-1314+	SM00297+1518-1626_1640-1748+	PF00439+1530-1611_1652-1733+Bromodomain\|PF12157+450-915+Protein_of_unknown_function_(DUF3591)\|PF15288+1281-1314+Zinc_knuckle	G3DSA:1.20.920.10:FF:000066+1639-1765+Transcription_initiation_factor_TFIID_subunit_1	PTHR13900+20-1757+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-205;436-483;924-1517;1743-1883	3.000	206-435;484-923;1518-1742	4rgw_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.565	212443.750	5.825	-16.500	30.377	8.072	53.956	46.044	15.242	15.135	47.424

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	2022.371	3629.701	2542.575	2133.708	2410.991	1989.751	2819.438	1902.408	1921.892	870.741	1321.234

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.743	-0.904	-0.144	0.145	-0.263	0.514	—	0.711	—	—	—	—	—

No JSON data available for plots.

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