Hg_chrom2_TN10mRNA_4050
Organism: Heterodera glycines Gene Locus: chr2:9402459-9404487 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.894 | 1.442 | 0.663 | 1.282 | 0.616 | 0.744 | 0.721 | 1.496 | 1.007 | 1.238 | 2.121 | 1.002 | 0.971 | 1.423 | 0.618 | 0.946 | 1.056 | 0.185 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3839
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RRIEFSLPDVKARKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.509
|
0.146
|
0.021
|
0.584
|
0.150
|
0.122
|
0.090
|
0.032
|
0.180
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001155
|
3.000
|
2.000
|
Hsc_gene_3061.t1;Hsc_gene_4588.t1
|
Hsc_gene_4588.t1
|
— |
Q18787.1 26S proteasome regulatory subunit 7 [Caenorhabditis elegans]
|
KAF8369040.1 rpt-1 [Pristionchus pacificus]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.831|GO:0110165_0.828|GO:0005622_0.770|GO:0043226_0.609|GO:0043229_0.597|GO:0016020_0.587|GO:0008150_0.558|GO:0032991_0.556|GO:0005737_0.526|GO:0003674_0.518|GO:0043227_0.515|GO:0043231_0.504
|
IPR003593+209-330+|IPR003959+213-327+|IPR003960+298-316+|IPR012340+7-164+|IPR027417+165-327_171-405+|IPR041569+351-393+|IPR048723+88-155+|IPR050221+27-406+
|
SM00382+209-330+
|
PF00004+213-327+ATPase_family_associated_with_various_cellular_activities_(AAA)|PF17862+351-393+AAA+_lid_domain|PF21236+88-155+26S_proteasome_regulatory_subunit_7,_OB_domain
|
G3DSA:1.10.8.60:FF:000005+329-400+26S_protease_regulatory_subunit_7|G3DSA:2.40.50.140:FF:000075+39-165+26S_protease_regulatory_subunit_7|G3DSA:3.40.50.300:FF:003005+166-327+26S_protease_regulatory_subunit_7
|
PTHR23073+27-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37
|
1.000
|
38-416
|
9ug9_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
46599.580
|
6.745
|
1.000
|
32.212
|
7.212
|
48.558
|
51.442
|
16.587
|
15.625
|
49.760
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
97.396
|
41.688
|
74.300
|
71.987
|
178.305
|
158.003
|
292.487
|
99.816
|
0.000
|
82.389
|
47.080
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.600
|
0.651
|
— |
1.278
|
— |
0.899
|
-0.771
|
1.695
|
-7.191
|
7.027
|
— | — | — |
No JSON data available for plots.