Hg_chrom2_TN10mRNA_4053
Organism: Heterodera glycines Gene Locus: chr2:9420212-9425025 Feature type: polypeptideProtein Sequence
Length: 1,150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 0.789 | 0.727 | 1.049 | 0.899 | 2.274 | 0.663 | 2.957 | 0.386 | 0.999 | 0.553 | 0.87 | 0.966 | 1.856 | 1.047 | 1.627 | 0.898 | 0.698 | 0.134 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3842
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.545
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PVEKRHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.809
|
0.095
|
0.022
|
0.405
|
0.047
|
0.038
|
0.032
|
0.041
|
0.091
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007204
|
1.000
|
1.000
|
Hsc_gene_4585.t1
|
Hsc_gene_4585.t1
|
— | — |
XP_024498704.1 Zinc finger protein 596 [Strongyloides ratti];CEF59493.1 Zinc finger protein 596 [Strongyloides ratti]
|
No
|
-0.470
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.971|GO:0009987_0.946|GO:0005575_0.898|GO:0050789_0.895|GO:0065007_0.895|GO:0110165_0.893|GO:0050794_0.891|GO:0008152_0.882|GO:0019222_0.882|GO:0031323_0.882|GO:0044237_0.882|GO:0005622_0.879|GO:0043226_0.876|GO:0043170_0.874|GO:0060255_0.874|GO:0005634_0.871|GO:0016020_0.871|GO:0043227_0.871|GO:0043229_0.871|GO:0043231_0.871|GO:0009058_0.867|GO:0009889_0.867|GO:0031326_0.867|GO:0044249_0.867|GO:0009059_0.866|GO:0010556_0.866|GO:0010467_0.862|GO:0010468_0.862|GO:0003674_0.853|GO:0005488_0.853|GO:0044238_0.793|GO:0080090_0.793|GO:0006139_0.780|GO:0016070_0.780|GO:0019219_0.780|GO:0051252_0.780|GO:0090304_0.780|GO:0006351_0.779|GO:0006355_0.779|GO:0032774_0.779|GO:0034654_0.779|GO:0141187_0.779|GO:2001141_0.779|GO:0003676_0.692|GO:0097159_0.692|GO:0003677_0.686|GO:0003690_0.686|GO:0006357_0.675|GO:0006366_0.675|GO:0032502_0.672|GO:0048856_0.672|GO:0032501_0.666|GO:0048519_0.647|GO:0048523_0.639|GO:0030154_0.634|GO:0048869_0.634|GO:0043565_0.611|GO:0009892_0.610|GO:1990837_0.609|GO:0031324_0.608|GO:0009890_0.595|GO:0010558_0.595|GO:0010605_0.595|GO:0031327_0.595|GO:0000976_0.570|GO:0001067_0.570|GO:0007275_0.564|GO:0048518_0.564|GO:0140110_0.564|GO:0048522_0.563|GO:0050896_0.551|GO:0009893_0.547|GO:0010604_0.547|GO:0031325_0.543|GO:0009891_0.538|GO:0031328_0.537|GO:0045935_0.530|GO:0045892_0.529|GO:0045934_0.529|GO:0051253_0.529|GO:1902679_0.529|GO:0051254_0.526|GO:0010557_0.525|GO:0000122_0.524|GO:1902680_0.513|GO:0045893_0.512
|
IPR013087+200-223_201-223_201-228_203-223_229-251_229-256_231-251_257-280_257-285_259-280_286-308_288-308_313-336_313-341_315-336_343-365_343-370_345-365_371-393_371-398_373-393_399-421_399-426_401-421_679-701_679-706_681-701_707-729_707-734_709-729_735-754_735-755+|IPR036236+198-258_255-308_307-339_339-374_365-417_678-710_701-753+|IPR050758+197-492+
|
SM00355+201-223_229-251_257-280_286-308_313-336_343-365_371-393_399-421_679-701_707-729_735-755+
|
PF00096+229-251_313-336_343-365_371-393_399-421_679-701_707-729_735-754+Zinc_finger,_C2H2_type|PF13894+286-308+C2H2-type_zinc_finger|PF13912+200-223+C2H2-type_zinc_finger
|
G3DSA:3.30.160.60:FF:000065+309-335+B-cell_CLL/lymphoma_6,_member_B|G3DSA:3.30.160.60:FF:000193+198-224_339-363+Zinc_finger_protein_300|G3DSA:3.30.160.60:FF:000446+253-278+Zinc_finger_protein|G3DSA:3.30.160.60:FF:000557+396-423+zinc_finger_and_SCAN_domain-containing_protein_29|G3DSA:3.30.160.60:FF:001049+730-756+zinc_finger_protein_319|G3DSA:3.30.160.60:FF:001963+225-252+Replication_initiator_1|G3DSA:3.30.160.60:FF:002343+364-395+Zinc_finger_protein_33A|G3DSA:3.30.160.60:FF:003017+703-729+Si:cabz01054396.2
|
PTHR23234+197-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-197;395-668;760-847;887-1150
|
3.000
|
198-394;669-759;848-886
|
5wjq_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
125751.630
|
7.294
|
27.000
|
24.087
|
11.130
|
53.217
|
46.783
|
14.696
|
9.391
|
55.217
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
390.149
|
271.783
|
85.921
|
446.161
|
640.574
|
798.832
|
394.798
|
169.077
|
12.564
|
644.798
|
373.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.890
|
0.578
|
2.483
|
0.489
|
0.335
|
-1.008
|
-2.358
|
1.369
|
-5.801
|
5.353
|
— | — | — |
No JSON data available for plots.