Hg_chrom2_TN10mRNA_4054
Organism: Heterodera glycines Gene Locus: chr2:9432251-9437164 Feature type: polypeptideProtein Sequence
Length: 849
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.233 | 0.814 | 0.609 | 1.237 | 1.027 | 0.673 | 0.942 | 1.099 | 1.337 | 0.982 | 1.594 | 1.407 | 1.11 | 1.178 | 1.06 | 0.83 | 0.803 | 0.815 | 0.797 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3843
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKRP,KRSR,AERKLSRKR,KRHQYALKRRPKKWKG,RRRRLLAMQAWKKKES
|
17-37
|
0.991
|
3-53
|
1.000
|
— | — |
0.000
|
— | — |
0.153
|
0.922
|
0.045
|
0.193
|
0.041
|
0.048
|
0.069
|
0.021
|
0.033
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007205
|
1.000
|
1.000
|
Hsc_gene_4584.t1
|
Hsc_gene_4584.t1
|
— |
Q9JJG9.1 Nitric oxide-associated protein 1 [Mus musculus]
|
KAH7716826.1 PIG-P protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005525
|
GO:0008150_0.949|GO:0009987_0.903|GO:0005575_0.817|GO:0110165_0.808|GO:0003674_0.750|GO:0005622_0.736|GO:0016020_0.733|GO:0043226_0.692|GO:0005488_0.679|GO:0043229_0.674|GO:0005737_0.649|GO:0043227_0.638|GO:0071840_0.630|GO:0043231_0.625|GO:0016043_0.622|GO:0006996_0.582|GO:0097159_0.582|GO:0003676_0.559|GO:0003723_0.549
|
IPR006073+451-502+|IPR027417+331-512_346-504+|IPR052807+125-809+
|
— |
PF01926+451-502+50S_ribosome-binding_GTPase
|
— |
PTHR46406+125-809+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
110-154;210-265
|
3.000
|
1-109;155-209;266-849
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
95692.460
|
7.859
|
11.000
|
26.031
|
10.718
|
47.821
|
52.179
|
14.134
|
11.896
|
48.057
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2851.037
|
7704.542
|
3573.457
|
2791.999
|
2660.998
|
2356.406
|
2824.999
|
2735.541
|
1815.330
|
1868.809
|
1845.890
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.338
|
-1.602
|
-0.247
|
-0.101
|
-0.161
|
0.272
|
— |
0.189
|
— | — | — | — | — |
No JSON data available for plots.