Hg_chrom2_TN10mRNA_4055
Organism: Heterodera glycines Gene Locus: chr2:9437284-9442608 Feature type: polypeptideProtein Sequence
Length: 1,352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.8 | 1.324 | 0.982 | 0.561 | 1.146 | 1.441 | 0.722 | 1.294 | 0.838 | 1.599 | 0.605 | 1.262 | 1.397 | 0.839 | 1.162 | 1.215 | 0.934 | 0.762 | 0.967 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3844
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRRK
|
16-43
|
0.906
|
— | — | — | — |
0.000
|
— | — |
0.208
|
0.408
|
0.063
|
0.341
|
0.506
|
0.325
|
0.438
|
0.078
|
0.231
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003422
|
1.000
|
2.000
|
Hsc_gene_4583.t1;Hsc_gene_4583.t2
|
Hsc_gene_4583.t1;Hsc_gene_4583.t2
|
— |
Q8BHY8.2 Sorting nexin-14 [Mus musculus]
|
KAI1727248.1 PXA domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0035091
|
GO:0008150_0.966|GO:0009987_0.925|GO:0005575_0.762|GO:0110165_0.758|GO:0071840_0.565|GO:0016043_0.552|GO:0008152_0.548|GO:0044237_0.529|GO:0016020_0.519
|
IPR001683+716-901_802-896+|IPR003114+151-375_151-377_153-290+|IPR036305+432-606+|IPR036871+709-907_802-899+|IPR044926+430-608+
|
SM00313+151-377+
|
PF00787+802-896+PX_domain|PF02194+153-290+PXA_domain
|
— |
PTHR22775+55-1341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;752-799;957-1073;1170-1217
|
4.000
|
8-751;800-956;1074-1169;1218-1352
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.607
|
151623.980
|
5.619
|
-17.500
|
24.556
|
10.799
|
50.074
|
49.926
|
12.278
|
12.278
|
49.260
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1751.271
|
4175.054
|
1933.122
|
1828.380
|
1692.285
|
1642.870
|
1955.762
|
1633.197
|
785.184
|
1500.170
|
1193.747
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.341
|
-1.329
|
— |
-0.143
|
— |
0.262
|
— |
0.403
|
— | — | — | — | — |
No JSON data available for plots.