Hg_chrom2_TN10mRNA_4057
Organism: Heterodera glycines Gene Locus: chr2:9444434-9449729 Feature type: polypeptideProtein Sequence
Length: 983
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.159 | 0.852 | 1.036 | 1.298 | 0.882 | 0.913 | 0.775 | 1.221 | 0.904 | 1.663 | 0.462 | 1.017 | 1.243 | 0.978 | 1.952 | 1.061 | 0.684 | 0.786 | 0.626 | 0.359 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3846
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRWQLVNMDKVRRAQR,RRNQSEGRPQWVQRRRPI,RRRPIFGARRRHRRAMGGRRLGRPDEGKTRRKTRDGR
|
62-92
|
0.938
|
72-92
|
0.975
|
— | — |
0.000
|
— | — |
0.737
|
0.116
|
0.061
|
0.450
|
0.097
|
0.037
|
0.073
|
0.040
|
0.097
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007207
|
1.000
|
1.000
|
Hsc_gene_4581.t1
|
Hsc_gene_4580.t1;Hsc_gene_4581.t1
|
— |
Q5I7G2.1 Retinoic acid receptor RXR [Lymnaea stagnalis]
|
KAI1733320.1 CAP-Gly domain-containing protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000978|GO:0003700|GO:0005515|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.911|GO:0009987_0.844|GO:0003674_0.812|GO:0005575_0.778|GO:0065007_0.771|GO:0110165_0.768|GO:0008152_0.755|GO:0050789_0.752|GO:0044237_0.743|GO:0009058_0.721|GO:0043170_0.721|GO:0044238_0.721|GO:0050794_0.709|GO:0005488_0.701|GO:0044249_0.699|GO:0009059_0.694|GO:0005622_0.681|GO:0043226_0.661|GO:0010467_0.652|GO:0043229_0.636|GO:0019222_0.616|GO:0031323_0.604|GO:0060255_0.597|GO:0009889_0.585|GO:0010556_0.585|GO:0031326_0.585|GO:0080090_0.571|GO:0006139_0.564|GO:0016020_0.557|GO:0010468_0.544|GO:0034654_0.536|GO:0090304_0.530|GO:0019219_0.527|GO:0016070_0.525|GO:0141187_0.525|GO:0032774_0.520|GO:0050896_0.515
|
IPR000536+222-366_232-418+|IPR001611+779-800+|IPR001628+14-85_14-89_16-84_17-33_17-43_33-48_66-74_74-82+|IPR013088+9-109+|IPR032675+555-740_741-857+|IPR035500+190-437_216-423+|IPR049636+17-92+|IPR050274+16-393+
|
SM00399+14-85+|SM00430+232-418+
|
PF00104+222-366+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+16-84+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000030+10-112+Nuclear_Hormone_Receptor_family
|
PTHR24083+16-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
460-520
|
2.000
|
1-459;521-983
|
3e00_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
108806.850
|
8.341
|
28.000
|
26.043
|
8.952
|
44.863
|
55.137
|
15.056
|
10.987
|
51.475
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
1433.409
|
2821.365
|
1784.859
|
1472.891
|
1455.901
|
1329.268
|
2026.845
|
1396.430
|
989.208
|
921.425
|
950.475
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.891
|
-1.075
|
-0.168
|
— | — |
0.619
|
— |
0.680
|
— | — | — | — | — |
No JSON data available for plots.