Hg_chrom2_TN10mRNA_4059
Organism: Heterodera glycines Gene Locus: chr2:9452949-9456588 Feature type: polypeptideProtein Sequence
Length: 707
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 0.987 | 1.183 | 0.732 | 1.226 | 1.451 | 0.404 | 1.273 | 1.257 | 1.797 | 1.007 | 0.832 | 1.611 | 0.571 | 1.068 | 0.909 | 0.765 | 0.879 | 0.218 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3848
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.850
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.341
|
0.104
|
0.010
|
0.591
|
0.209
|
0.428
|
0.520
|
0.084
|
0.205
|
0.211
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007209
|
1.000
|
1.000
|
Hsc_gene_4578.t1
|
Hsc_gene_4578.t1
|
— |
Q18406.1 Exocyst complex component 5 [Caenorhabditis elegans]
|
KAI1714258.1 exocyst complex component sec10 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737
|
GO:0008150_0.881|GO:0009987_0.832|GO:0005575_0.771|GO:0110165_0.767|GO:0005622_0.726|GO:0051179_0.674|GO:0006810_0.659|GO:0051234_0.659|GO:0005737_0.656|GO:0016192_0.592|GO:0071840_0.527|GO:0016043_0.521
|
IPR009976+3-700+|IPR048625+46-155+|IPR048627+161-379_388-703+
|
— |
PF07393+161-379_388-703+Exocyst_complex_component_Sec10-like,_alpha-helical_bundle|PF20667+46-155+Exocyst_complex_component_Sec10,_N-terminal
|
— |
PTHR12100+3-700+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-707
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
80707.600
|
6.060
|
-5.000
|
28.289
|
11.174
|
49.222
|
50.778
|
14.427
|
13.861
|
43.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1406.456
|
2558.322
|
1381.917
|
1347.576
|
1356.508
|
1704.030
|
1926.741
|
2046.984
|
961.955
|
810.998
|
875.694
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.118
|
-1.062
|
— | — |
0.344
|
0.188
|
— | — | — | — | — | — | — |
No JSON data available for plots.