Hg_chrom2_TN10mRNA_4060
Organism: Heterodera glycines Gene Locus: chr2:9456927-9459470 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 0.868 | 0.859 | 1.029 | 0.954 | 0.957 | 0.711 | 1.866 | 0.995 | 1.042 | 0.641 | 1.61 | 2.211 | 0.909 | 2.031 | 1.279 | 0.612 | 0.867 | 1.148 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3849
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.335
|
0.271
|
0.055
|
0.529
|
0.113
|
0.484
|
0.330
|
0.033
|
0.371
|
0.187
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007210
|
1.000
|
1.000
|
Hsc_gene_4577.t1
|
Hsc_gene_4577.t1
|
— |
Q9VTW2.1 Inositol polyphosphate 5-phosphatase E [Drosophila melanogaster]
|
KAI1712302.1 72 kDa inositol polyphosphate 5-phosphatase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791|GO:0046856
|
GO:0008150_0.926|GO:0009987_0.810|GO:0003674_0.780|GO:0005575_0.743|GO:0110165_0.743|GO:0003824_0.635|GO:0016020_0.604|GO:0008152_0.603|GO:0044238_0.583|GO:0016787_0.576|GO:0044237_0.573|GO:0016788_0.556|GO:0005622_0.549|GO:0016791_0.542|GO:0042578_0.542
|
IPR000300+102-401+|IPR036691+90-402_103-397+|IPR046985+65-399+
|
SM00128+102-401+
|
PF22669+110-391+Endonuclease/Exonuclease/phosphatase_family_2
|
— |
PTHR11200+65-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-63
|
1.000
|
64-402
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
46338.000
|
9.622
|
22.500
|
28.358
|
14.925
|
48.507
|
51.493
|
17.910
|
10.448
|
46.517
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
145.601
|
542.898
|
430.686
|
183.810
|
44.816
|
21.134
|
43.603
|
182.057
|
6.202
|
88.974
|
53.500
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.565
|
-1.700
|
-1.119
|
-2.068
|
-1.070
|
1.054
|
3.003
|
-1.921
|
— |
5.116
|
— | — | — |
No JSON data available for plots.