Hg_chrom2_TN10mRNA_4062
Organism: Heterodera glycines Gene Locus: chr2:9467165-9470866 Feature type: polypeptideProtein Sequence
Length: 620
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.6 | 1.05 | 1.349 | 0.834 | 1.022 | 1.199 | 0.614 | 1.452 | 1.183 | 1.548 | 0.904 | 0.569 | 1.478 | 1.148 | 1.053 | 1.037 | 0.714 | 0.733 | 0.868 | 1.139 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3851
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRPYDDPFSGFKSRLRHK,RKKITSRPTILQLVRLRAK
|
— | — |
22-50
|
0.966
|
— | — |
0.000
|
— | — |
0.728
|
0.229
|
0.004
|
0.562
|
0.156
|
0.198
|
0.148
|
0.038
|
0.107
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007212
|
1.000
|
1.000
|
Hsc_gene_4575.t1
|
Hsc_gene_4575.t1
|
— |
Q3TIU4.2 2',5'-phosphodiesterase 12 [Mus musculus]
|
KAF7623503.1 Endo/exonuclease/phosphatase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.811|GO:0110165_0.798|GO:0005622_0.753|GO:0008150_0.702|GO:0005737_0.666|GO:0009987_0.649|GO:0016020_0.594|GO:0043226_0.578|GO:0003674_0.565|GO:0043229_0.561|GO:0043227_0.507
|
IPR005135+280-597+|IPR036691+250-616_272-608+|IPR050410+257-605+
|
— |
PF03372+280-597+Endonuclease/Exonuclease/phosphatase_family
|
— |
PTHR12121+257-605+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
598-620
|
1.000
|
1-597
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
70833.350
|
5.941
|
-6.000
|
27.581
|
13.226
|
48.387
|
51.613
|
14.032
|
13.548
|
47.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1463.925
|
1649.174
|
1257.963
|
1418.300
|
1503.710
|
1226.652
|
1743.968
|
1143.324
|
1220.451
|
1760.675
|
1529.150
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.621
|
-0.355
|
0.282
|
— |
-0.279
|
0.518
|
— |
0.751
|
— | — | — | — | — |
No JSON data available for plots.