Hg_chrom2_TN10mRNA_4066
Organism: Heterodera glycines Gene Locus: chr2:9485667-9486384 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.156 | 0.867 | 1.242 | 0.857 | 2.795 | 1.274 | 1.257 | 0.311 | 0.828 | 1.091 | 0.941 | 1.096 | 0.173 | 0.597 | 1.141 | 0.355 | 0.815 | 0.753 | 1.433 | 0.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3855
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.881
|
0.163
|
0.015
|
0.329
|
0.035
|
0.065
|
0.045
|
0.003
|
0.043
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007215
|
1.000
|
1.000
|
Hsc_gene_4568.t1
|
— | — |
Q9FGP7.1 Nuclear transcription factor Y subunit C-6 [Arabidopsis thaliana]
|
KAI1727726.1 histone-like transcription factor (CBF/NF-Y) and archaeal histone domain-containing protein [Ditylenchus destructor]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0046982
|
GO:0005575_0.861|GO:0008150_0.858|GO:0110165_0.851|GO:0005622_0.761|GO:0009987_0.749|GO:0016020_0.721|GO:0043226_0.686|GO:0043229_0.659|GO:0043227_0.624|GO:0065007_0.624|GO:0050789_0.610|GO:0043231_0.607|GO:0008152_0.593|GO:0044237_0.576|GO:0044238_0.575|GO:0043170_0.568|GO:0009058_0.565|GO:0005634_0.560|GO:0009059_0.555|GO:0044249_0.555|GO:0050794_0.537|GO:0006139_0.501|GO:0010467_0.501
|
IPR003958+7-70+|IPR009072+2-84_5-92+|IPR050568+4-121+
|
— |
PF00808+7-70+Histone-like_transcription_factor_(CBF/NF-Y)_and_archaeal_histone
|
— |
PTHR10252+4-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
80-161
|
1.000
|
1-79
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.969
|
17672.440
|
4.099
|
-18.500
|
36.025
|
3.727
|
52.174
|
47.826
|
12.422
|
23.602
|
49.068
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
721.365
|
614.510
|
356.453
|
325.855
|
448.286
|
322.717
|
734.730
|
338.902
|
933.570
|
1277.750
|
1130.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.017
|
-1.052
|
— |
0.429
|
-0.460
|
1.199
|
— |
1.260
|
— | — | — | — | — |
No JSON data available for plots.