Hg_chrom2_TN10mRNA_4069
Organism: Heterodera glycines Gene Locus: chr2:9487979-9499099 Feature type: polypeptideProtein Sequence
Length: 1,946
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.297 | 0.932 | 0.878 | 0.886 | 0.951 | 1.225 | 0.648 | 1.31 | 0.856 | 1.743 | 0.576 | 1.209 | 1.185 | 0.87 | 1.028 | 1.211 | 0.741 | 1.106 | 0.435 | 0.469 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3857
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
33-58
|
0.994
|
15-36
|
0.990
|
— | — |
0.000
|
— | — |
0.388
|
0.161
|
0.046
|
0.503
|
0.256
|
0.412
|
0.354
|
0.024
|
0.347
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007216
|
1.000
|
1.000
|
Hsc_gene_4566.t1
|
Hsc_gene_4566.t1
|
— |
Q8NDA8.3 Maestro heat-like repeat-containing protein family member 1 [Homo sapiens]
|
KAI1711105.1 maestro heat-like repeat-containing protein family member 2A [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.916|GO:0008150_0.852|GO:0009987_0.803|GO:0016020_0.742|GO:0005622_0.722|GO:0005737_0.661|GO:0016043_0.661|GO:0071840_0.661|GO:0043226_0.657|GO:0043229_0.631|GO:0043227_0.597|GO:0006996_0.587|GO:0043231_0.582|GO:0005773_0.527
|
IPR011989+1728-1946+|IPR016024+113-930_946-1943+|IPR045206+91-1323+|IPR048465+1096-1298+
|
— |
PF21047+1096-1298+Maestro,_HEAT_repeats
|
— |
PTHR23120+91-1323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1442-1536
|
2.000
|
1-1441;1537-1946
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
211746.790
|
6.266
|
-7.500
|
21.994
|
9.044
|
43.782
|
56.218
|
11.459
|
10.534
|
52.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
3112.750
|
5181.394
|
2639.773
|
2545.583
|
2359.477
|
2737.765
|
4919.595
|
2233.566
|
1475.225
|
4030.431
|
2935.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.202
|
-1.163
|
— |
-0.141
|
0.229
|
0.856
|
-0.399
|
1.282
|
— | — | — | — | — |
No JSON data available for plots.