Hg_chrom2_TN10mRNA_4074
Organism: Heterodera glycines Gene Locus: chr2:9515552-9516377 Feature type: polypeptideProtein Sequence
Length: 120
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 0.775 | 1.667 | 0.575 | 2.639 | 0.427 | 0.298 | 0.417 | 0.741 | 1.577 | 1.894 | 0.98 | 1.389 | 0.481 | 1.701 | 0.714 | 0.273 | 0.884 | 0.0 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3862
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKTPEERKYLFRKELR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.839
|
0.072
|
0.019
|
0.219
|
0.019
|
0.079
|
0.026
|
0.002
|
0.100
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007220
|
1.000
|
1.000
|
Hsc_gene_4556.t1
|
Hsc_gene_4556.t1
|
— |
P61216.1 Transcription initiation factor TFIID subunit 13 [Mus musculus]
|
KAI1728615.1 transcription initiation factor IID, 18kD subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006366|GO:0046982
|
GO:0005575_0.941|GO:0110165_0.940|GO:0005622_0.930|GO:0043226_0.896|GO:0043229_0.884|GO:0008150_0.780|GO:0016020_0.773|GO:0043227_0.727|GO:0043231_0.711|GO:0005634_0.619|GO:0009987_0.596|GO:0043228_0.570|GO:0043232_0.570|GO:0065007_0.563|GO:0032991_0.560|GO:0050789_0.545|GO:0050794_0.527
|
IPR003195+11-117_26-115_28-116+|IPR009072+28-71_28-72+
|
— |
PF02269+28-116+Transcription_initiation_factor_IID,_18kD_subunit
|
— |
PTHR11380+11-117+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-120
|
8was_m
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
14257.190
|
4.851
|
-4.500
|
46.667
|
8.333
|
58.333
|
41.667
|
21.667
|
25.000
|
36.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
576.302
|
383.608
|
470.921
|
394.964
|
485.628
|
589.506
|
707.577
|
801.890
|
328.866
|
836.887
|
619.164
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.267
|
0.294
|
0.275
|
0.336
|
— | — | — | — | — | — |
No JSON data available for plots.