Hg_chrom2_TN10mRNA_4075
Organism: Heterodera glycines Gene Locus: chr2:9516511-9519201 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 1.074 | 0.84 | 0.623 | 0.904 | 1.236 | 0.956 | 1.406 | 1.205 | 1.384 | 0.608 | 1.181 | 1.618 | 1.004 | 1.229 | 1.061 | 0.922 | 0.821 | 0.618 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3863
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.539
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-32
|
0.993
|
17-37
|
0.992
|
— | — |
0.000
|
— | — |
0.103
|
0.957
|
0.023
|
0.213
|
0.023
|
0.143
|
0.100
|
0.010
|
0.042
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007221
|
1.000
|
1.000
|
Hsc_gene_4555.t1
|
Hsc_gene_4555.t1
|
— |
Q21217.1 Probable 4-aminobutyrate aminotransferase, mitochondrial [Caenorhabditis elegans]
|
KAI1715565.1 aminotransferase class-III domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003867|GO:0008483|GO:0009448|GO:0030170
|
GO:0008150_0.789|GO:0005575_0.779|GO:0110165_0.768|GO:0005622_0.697|GO:0009987_0.655|GO:0005737_0.651|GO:0016020_0.596|GO:0008152_0.594|GO:0043226_0.550|GO:0043229_0.546|GO:0044238_0.543|GO:0044237_0.540|GO:0043227_0.515|GO:0043231_0.505
|
IPR004631+36-491+|IPR005814+15-496_55-493_67-492+|IPR015421+106-406+|IPR015422+45-486+|IPR015424+74-495+
|
— |
PF00202+67-492+Aminotransferase_class-III
|
G3DSA:3.40.640.10:FF:000073+106-406+Probable_4-aminobutyrate_aminotransferase
|
PTHR43206+29-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-498
|
1ohy_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
55131.820
|
7.487
|
7.000
|
22.892
|
11.647
|
45.382
|
54.618
|
12.851
|
10.040
|
50.402
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
1694.586
|
1253.220
|
1710.300
|
1955.168
|
2513.362
|
2369.450
|
2244.141
|
2618.422
|
433.143
|
1589.931
|
1094.165
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.219
|
0.504
|
0.302
|
0.330
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.