Hg_chrom2_TN10mRNA_4076
Organism: Heterodera glycines Gene Locus: chr2:9520166-9521859 Feature type: polypeptideProtein Sequence
Length: 367
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 1.014 | 1.139 | 0.752 | 0.999 | 0.838 | 0.584 | 0.954 | 1.817 | 1.694 | 1.115 | 1.603 | 1.135 | 0.681 | 1.001 | 1.09 | 0.581 | 1.032 | 0.419 | 0.481 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3864
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.917
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.151
|
0.840
|
0.040
|
0.185
|
0.413
|
0.044
|
0.132
|
0.325
|
0.090
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007222
|
1.000
|
1.000
|
Hsc_gene_10798.t1
|
Hsc_gene_4554.t1
|
— |
P54815.2 Mitochondrial sorting homolog [Caenorhabditis elegans]
|
KAF7637223.1 AAA domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0008150_0.914|GO:0005575_0.871|GO:0110165_0.871|GO:0009987_0.852|GO:0005622_0.795|GO:0043226_0.695|GO:0043229_0.684|GO:0016020_0.662|GO:0071840_0.653|GO:0016043_0.646|GO:0005737_0.593|GO:0006996_0.576|GO:0003674_0.572|GO:0043227_0.553|GO:0043231_0.531|GO:0065007_0.504
|
IPR003593+123-258+|IPR003959+127-256+|IPR003960+228-247+|IPR027417+86-314_86-343+|IPR051701+48-311+
|
SM00382+123-258+
|
PF00004+127-256+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR45644+48-311+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-367
|
5w0t_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
40907.700
|
7.328
|
3.500
|
26.431
|
8.174
|
45.232
|
54.768
|
14.169
|
12.262
|
46.866
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
1032.392
|
891.321
|
703.454
|
978.283
|
1318.834
|
1180.539
|
1189.600
|
920.083
|
739.366
|
1268.899
|
1041.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.571
|
— |
0.585
|
0.400
|
— | — |
-0.464
|
0.513
|
— | — | — | — | — |
No JSON data available for plots.