SCN Proteipedia

Hg_chrom2_TN10mRNA_4077

Organism: Heterodera glycines Gene Locus: chr2:9523664-9525229 Feature type: polypeptide

Protein Sequence

Length: 321

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.761	1.304	1.189	0.752	0.363	0.799	0.927	1.713	1.177	1.179	0.944	1.283	0.606	0.539	0.763	1.469	1.072	1.322	3.115	0.55	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3865	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.557	0.218	0.015	0.584	0.125	0.143	0.167	0.168	0.158	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003424	2.000	1.000	Hsc_gene_4553.t1	Hsc_gene_4553.t1	—	Q21215.3 Small ribosomal subunit protein RACK1 [Caenorhabditis elegans]	KAI1715563.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]	No	-0.150

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0043022\|GO:0045182	GO:0008150_0.934\|GO:0005575_0.830\|GO:0110165_0.821\|GO:0009987_0.786\|GO:0065007_0.745\|GO:0050789_0.736\|GO:0005622_0.698\|GO:0050794_0.683\|GO:0050896_0.637\|GO:0003674_0.621\|GO:0016020_0.607\|GO:0005737_0.590\|GO:0043226_0.552\|GO:0005488_0.527\|GO:0043229_0.523\|GO:0051716_0.507	IPR001680+4-44_6-43_11-53_53-92_54-92_60-101_95-134_97-134_102-134_136-179_139-179_145-188_182-221_189-221_189-230_224-261_225-261_284-319_296-318_296-321+\|IPR015943+8-321+\|IPR019775+79-93_166-180_208-222+\|IPR020472+79-93_121-135_208-222+\|IPR036322+5-320+\|IPR045223+3-320+	SM00320+4-44_53-92_95-134_136-179_182-221_224-261_284-319+	PF00400+6-43_54-92_97-134_139-179_189-221_225-261_296-318+WD_domain,_G-beta_repeat	G3DSA:2.130.10.10:FF:000018+8-321+Receptor_for_activated_C_kinase_1	PTHR19868+3-320+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1	1.000	2-321	6xu8_Ag	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.871	35348.200	8.391	9.500	22.118	11.526	47.664	52.336	13.396	8.723	57.009

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	sienna3	7666.906	1408.113	4935.012	11759.092	12697.072	9120.867	6701.139	3394.089	7819.081	8922.635	8449.683

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.581	2.925	1.361	—	-0.462	-0.434	-1.534	1.126	—	—	—	—	—

No JSON data available for plots.

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