Hg_chrom2_TN10mRNA_4080
Organism: Heterodera glycines Gene Locus: chr2:9530454-9532539 Feature type: polypeptideProtein Sequence
Length: 352
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 0.793 | 0.981 | 0.588 | 0.663 | 1.166 | 0.643 | 1.42 | 0.884 | 1.536 | 0.603 | 0.836 | 2.367 | 1.366 | 1.681 | 1.38 | 0.745 | 0.646 | 1.093 | 0.334 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3868
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
6-30
|
0.995
|
1-33
|
0.719
|
0.662
|
0.000
|
0.000
|
0.283
|
0.495
|
0.030
|
0.340
|
0.457
|
0.231
|
0.356
|
0.096
|
0.146
|
0.602
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007225
|
1.000
|
1.000
|
Hsc_gene_4550.t1
|
Hsc_gene_4550.t1
|
— |
Q6KFX9.1 Beta-1,3-N-acetylglucosaminyltransferase radical fringe [Danio rerio]
|
KAI1716964.1 fringe-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.938|GO:0065007_0.700|GO:0050789_0.682|GO:0009987_0.670|GO:0032501_0.633|GO:0003674_0.630|GO:0005575_0.618|GO:0110165_0.618|GO:0032502_0.613|GO:0048856_0.613|GO:0007275_0.592|GO:0050794_0.589|GO:0016020_0.508|GO:0005622_0.504
|
IPR003378+46-302+
|
— |
PF02434+46-302+Fringe-like
|
— |
PTHR10811+31-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-352
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
39865.610
|
9.909
|
15.000
|
24.432
|
13.920
|
46.591
|
53.409
|
15.057
|
9.375
|
48.580
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
red
|
289.131
|
105.298
|
51.594
|
94.047
|
445.799
|
293.538
|
112.066
|
153.794
|
13.735
|
783.594
|
453.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.261
|
-0.300
|
0.977
|
2.213
|
-0.587
|
-1.381
|
-1.050
|
— |
-5.944
|
— | — | — | — |