Hg_chrom2_TN10mRNA_4081
Organism: Heterodera glycines Gene Locus: chr2:9532762-9534701 Feature type: polypeptideProtein Sequence
Length: 398
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 1.169 | 0.594 | 1.213 | 1.424 | 1.611 | 0.598 | 2.261 | 1.117 | 1.528 | 0.838 | 0.887 | 1.326 | 0.676 | 1.333 | 0.897 | 0.535 | 0.876 | 0.387 | 0.665 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3869
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.728
|
0.147
|
0.007
|
0.552
|
0.113
|
0.379
|
0.206
|
0.004
|
0.080
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007226
|
1.000
|
1.000
|
Hsc_gene_4549.t1
|
Hsc_gene_4549.t1
|
— |
Q7SXR3.2 E3 ubiquitin-protein transferase MAEA [Danio rerio]
|
KAI1704517.1 macrophage erythroblast attacher [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004842|GO:0005515|GO:0043161|GO:0061630
|
GO:0005575_0.897|GO:0110165_0.894|GO:0005622_0.835|GO:0008150_0.727|GO:0009987_0.674|GO:0043226_0.671|GO:0043229_0.647|GO:0005737_0.601|GO:0003674_0.591|GO:0005488_0.544|GO:0016020_0.530|GO:0005515_0.524
|
IPR006594+121-153+|IPR006595+163-216+|IPR024964+161-306+|IPR027370+341-381+|IPR044063+341-383+|IPR045098+12-397+
|
— |
PF10607+161-306+CTLH/CRA_C-terminal_to_LisH_motif_domain|PF13445+341-381+RING-type_zinc-finger
|
— |
PTHR12170+12-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-398
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
45366.920
|
7.626
|
10.000
|
28.392
|
12.060
|
49.246
|
50.754
|
16.583
|
11.809
|
43.216
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
910.040
|
972.985
|
663.255
|
589.821
|
686.422
|
695.172
|
947.945
|
745.979
|
934.245
|
1292.651
|
1139.048
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.783
|
-0.859
|
— |
0.187
|
— |
0.457
|
— |
0.488
|
— | — | — | — | — |
No JSON data available for plots.